HsaEX1010269 @ hg38
Exon Skipping
Gene
ENSG00000233175 | CTD-2020K17.3
Description
NA
Coordinates
chr17:45238028-45241734:-
Coord C1 exon
chr17:45241111-45241734
Coord A exon
chr17:45240490-45240604
Coord C2 exon
chr17:45238028-45239241
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGCGCCACTTGCTCCTGCAGTTC
3' ss Score
6.98
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCCCCGGAGTCGGAGCATCACCGCCGCTCGGAGTTGCCACAGCGACGGGGAGGATCTCGATGGAGACAGCATCCCCCGGCCCCCGCAGAATACGGATTAACCCCTTCTCCTCCAGCTCCTCCACCTTCAGCTCCAGGGCCGAGGGCCGCGTCGGGGCAGCGGGAGGCGCTTTCTCAGGCTCTGGGGGACGCCTGGAGGGCCCCATGGCGGTCGATTCGCTGAAGCGCTCCTACGAACCCCACGGGAGGGGTCAGTGCCCACCAGCAGGCTCCTTGGCACCAAGCCTCCATCTTCTTCCCGGGGTGGAGGGAGATGTCAAGCCTAGAAGCCTCAGCTGGCCTGTTCTTGGGCGCCTGGCCTACCACCCGCCCCAGCCTCACCCGCAGGGTCTCCAACTCCTTGCGCGCCTGGCTTAGCTGTTTTTCCAGTTCTGCAATCTTGGCCATGGATTCGTTCTCCGCGTCCCGAAGCCGCTCTGTCAGCTGTAGCACCAGCACATG
Seq A exon
TTCCTCCATGTGCTCCAGCACAGCGTTCTTGGTCTCTGTGTCCTCCAGCAGCGCCCCCACATCAAAAATATTGTCCAGGTACGCCTGGATCTGCACCTGCAGCTTGTCACTCTCG
Seq C2 exon
ATGGCAAAACTGACACTGAGAGAGAGGAAGAGGCCTATCCAAGGTCACACGGCAGGCAACGGCAGAGCCAGGATTTAAACCCAGGTCTACCTGACCCCAGCACTCATGCTGCTAACCACTCAGCCATACTCTGCCGTGGGCAGGCAGTTCAGTCTGGGGGGCAGTACAGGGCTTACCTCCAAGTACAGGTCCAGGCCCAAGTGGGTGAACTCATATTGCAGGAAGACACGGAAGTTCATGTTCTCCACCGAATGTACCACAATGTTGATGAACTGCATGCAGGCCACCTGGGAGCCAGGGACATGGGGAGATCTATGATCCTCTAGGTGGGGTTGCTCAATGCCTTCCACCTCCACTTACCCCAAGCCTCCCTCCTTCTCCACAGTTCTCACTCCACTAACTCCCAGCCTTGGCCTGCCCAACATTTCACCTCCATGTTCCCTCAATCCAGCCCCCTGCCAACATCCACCCTTCCCCTACTGACCACTCAGTCCTTACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233175_CASSETTE1
Average complexity
S
Mappability confidence:
50%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCATGGATTCGTTCTCC
R:
CCTGGACCTGTACTTGGAGGT
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains