HsaINT0065098 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45238955-45240625:+
Coord C1 exon
chr17:45238955-45239065
Coord A exon
chr17:45239066-45240475
Coord C2 exon
chr17:45240476-45240625
Length
1410 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TCCTTCCATCTGGGGGACAGAGG
3' ss Score
1.64
Exon sequences
Seq C1 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTACATTCGGTGGAGAACATGAACTTCCGTGTCTTCCTGCAATATGAGTTCACCCACTTGGGCCTGGACCTGTACTTGGAG
Seq A exon
GTAAGCCCTGTACTGCCCCCCAGACTGAACTGCCTGCCCACGGCAGAGTATGGCTGAGTGGTTAGCAGCATGAGTGCTGGGGTCAGGTAGACCTGGGTTTAAATCCTGGCTCTGCCGTTGCCTGCCGTGTGACCTTGGATAGGCCTCTTCCTCTCTCTCAGTGTCAGTTTTGCCATCTGTGAAATAGGAGAATCATAGAAGATAATCTTGACTCTAAATGCATAGACCAGTGCCTGGCACATACCAGGCCCCCAGTCTATGGAACTGTTTTTGCAGGCACCAGAACAGGTCAAGGTAGCCCAGAGTCTGGCTCTGGGAGCACCAGCCTCAGACAGGTGCTCTGACTCCAGCATATAATGGGGAACCCAGAGATACAGGGTAGAAGCAGGAGTTGGCTCATGCTGGATGGGCCCAGGACATGGAGGAGTTCCCTGCCCTGGGGAAGGTGGGCAGAGCTGCTTGGTGCTTCCTGGCCCAGGCTGAGCAGAGAAGCTGCAGCTCCTTCTCTGCTTCCTTTGGGAGGTTTCCTGGAGGAGCGGGGCTTTCGGGGTTGGATTTTTGAAAGCCAGGATTAACAAAAGGTAGAGAGCAGGCTGGCGGGGGGGTCTATCTGTGCAATGGAGTATTATTCAGCCACAAGAAGGAATGAAGTATTGACACATGGTACAACATGGGTGAGCCTTGAAAACATGCTAAGTGAAAGAAGCCAGACACAAAAGGTCACGTACTCTATGATTGCTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTAGAGTGCAGTGACACGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTTTCCAGCCTCCCCAGTAGTTGGGATTATAGGTGCCCACCACCACACTCGGTTAATTTTTGTATTTTTGGTAGAGACGGGGGTTTCACCACGTTGGCCAGGTTGGTCTTGAACTCCTGACCTTAGGTGATCCGTCTGCCTCAGCCTCCCACAGTGCTGGGATTACAGGCATGAGCCACCTCGCCCAGCTATCTATGATTGCTTTATATGAAATGTCCAGAATGGGTAAATCCATAAAGATGGAAAGTAGATTAGTGGTTGCCAGGGACTGGGGGAGGAGAGAATGGCAAGTGACTGCTGACGCCTGTGGGGTTTCTTTTTGGGCTGATGACAATGTTCTGGAATTAGATAATGGTGATGGTTGCACAACCTTGTGGCTATACTAAGAATGACTGAATTGTACACTTTAAAATGGATTTTATGATTTGTGAATTATATATTAAAAAATAAAGAAAAAGTAGGCTAGGGCTCAGGCCCCTTCCTCTGGATGGCAGTGGTGGCAGGGGGGTGGTTTGGAAAGACTCCCCCCCACACACACACCAGGCCTCACCCCACTCCTTCCATCTGGGGGACAG
Seq C2 exon
AGGCTTCGGCTCACCGAGAGTGACAAGCTGCAGGTGCAGATCCAGGCGTACCTGGACAATATTTTTGATGTGGGGGCGCTGCTGGAGGACACAGAGACCAAGAACGCTGTGCTGGAGCACATGGAGGAACTGCAGGAGCAAGTGGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(23.5=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGCAGTTCATCAAC
R:
CAGCGCCACTTGCTCCTG
Band lengths:
258-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development