BtaINT0063148 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45511800-45513032:+
Coord C1 exon
chr19:45511800-45511910
Coord A exon
chr19:45511911-45512882
Coord C2 exon
chr19:45512883-45513032
Length
972 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
3' ss Seq
ACCTTCCATCTCGGGGACAGAGG
3' ss Score
3.94
Exon sequences
Seq C1 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTACATTCAGTGGAGAACATGAACTTCCGTGTCTTCCTGCAATACGAGTTCACGCACCTGGGCCTGGACCTGTACTTGGAG
Seq A exon
GTTAGCCCTGCACCCCCACCCCAACCCCAACCCCGGGACTTAACCACTTGCCTGCTGCAGAGTATGCCTCAGTGGTTAGCATCTGTAAAATAGGAGAACCACAGAAATAATAAAGACTATAAATGTGTAGGGAGGTTCCTGCTGCAAAATAGGCACCCAGATCACGGAGCGGTTGTTGTCGGCTCTAGAACAGGCTCTGGGAGGCCCTGGGTCTGGCTCTGGGACACAATGGGGAGCACAAAGTCTGAGCCAAAGCAGGAACTGGCTCTTGCTGTATGGGTCTGGGTCATGGGAGAGTTCCTTGCTCTGGGGAAAGTGGGCAGAGGGGTTTGGTTCTTCCTGGTTTGGCCTGAGCAGACAAGCTGTAGCTTTCTTCTGATTTCTTTGTGAGGCTTCCCAAGATGAGCAGGGCCTTTAGAACTGGATTTTTGAAACCCAGAATCAACAAAAAGTGAAAAGCAGGCGAGGGTGATATGTCCATTCCATGGAATATTATTCAGCCACAAAAAAGAACAAAGTACTGATACATGGTACAGTAGGAATGGGCCTTGAAGACTTTATGCTATTATGCTCAGTGAAAGAAGCCAGACACAAAAGCCATATAGTGTATGATTCCCTAAAATGAAATGTCTGTAATAGGTAAGTCCAGTAGAGAGAGATTGGTGGTTGCCAGGGGCTAGAAGAGGAGAGGATGGGGGAGTGGCTGCTAATGGGGACAAGGTTTCTTTTGGGGGTGATGTTCTGGAATGAGGTAGTGGTGAAGGTTTGCACAACCTTGTGAATATACTAAAAACTATTGTACACTTTAAAAGAGTGAATTTTATGGTATATAAATTACATCTCAATTAAAAAAAAACCCCAAAGTGGGCTACGGCTCAGGCCCCTTTGTCTTGGCTCTGGTGGTGATGGGGAGGGGTATTGGAAAGATCCCTCACACCAGGCCTTACCCTGCACCTTCCATCTCGGGGACAG
Seq C2 exon
AGGCTTCGGCTCACGGAGAGTGACAAGCTGCAGGTGCAGATTCAGGCCTACCTGGACAACATCTTTGACGTGGGCGCGCTGCTGGAGGACACTGAGACCAAGAATGCTGTGCTGGAGCACATGGAGGAGCTGCAGGAGCAGGTGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(19.6=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(26.6=100),PF029949=Transposase_22=PU(26.7=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGCAGTTCATCAAC
R:
CTCCTGCAGCTCCTCCATGT
Band lengths:
246-1218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development