GgaINT0047752 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37156802-37157271:+
Coord C1 exon
chr7:37156802-37156912
Coord A exon
chr7:37156913-37157121
Coord C2 exon
chr7:37157122-37157271
Length
209 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TTTTGTTTTTGGCTATACAGAAA
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTGGCTTGCATGCAGTTCATCAACATCGTTGTGCACTCGGTGGAGGACATGAACTTCCGGGTCCATCTGCAATACGAATTTACAAAGCTGGGCCTGGACGAGTATTTGGAC
Seq A exon
GTGAGTATGACCAGGTTCCTGCACGTGGTCTTTGGAAATGACTGTTTTTCATGTATGATCTCAGCTAATGCTGAAATATGGAGTGTGTTCCTGAACGATGGAGGTGGCCAAACTCCCACTGCTCTCCCTCCCCTTTGCACTGTGGGCAGTTGTGGTGCTTCAGGCTGCTGCTGATGCCGAGTGACACCTTTTTGTTTTTGGCTATACAG
Seq C2 exon
AAACTGAAACACACAGAGAGTGACAAACTGCAGGTGCAAATCCAAGCGTATCTGGATAACGTTTTTGACGTGGGAGCATTACTGGAGGATGCTGAAACCAAGAATGCAGCCTTGGAAAGAGTTGAAGAACTGGAAGAAAACATTTCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(17.6=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGCATGCAGTTCATCA
R:
GTGGGAAATGTTTTCTTCCAGT
Band lengths:
260-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]