DreINT0069066 @ danRer10
Intron Retention
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4801473-4801815:-
Coord C1 exon
chr9:4801705-4801815
Coord A exon
chr9:4801623-4801704
Coord C2 exon
chr9:4801473-4801622
Length
82 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GTCTCTCGCTCTCGCTATAGAAG
3' ss Score
8
Exon sequences
Seq C1 exon
GTCGCCTGCATGCAGTTTATAAACATCGTGGTTCATTCTGTGGAAGACATGAATTTTCGAGTGCACTTACAGTATGACTTCACAAAACTAGGTCTGGATGAATATCTGGAC
Seq A exon
GTGAGTATGAACGTAATTCTTCTGATGTTCAGTATCACTTGCAGGACGTCCCGTCACTCTCTGTCTCTCGCTCTCGCTATAG
Seq C2 exon
AAGCTGAAGCACACCGAGAGCGATAAGCTGCATGTGCAGATTCAAGCATACCTGGATAACGTGTTTGATGTCGGAGCTCTGTTAGAGGACGCAGAAACCAAAAACGCAGCGCTGGAGAGGGTGGAGGAACTAGAGGAGAACATGTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586:ENSDART00000016814:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(22.0=100),PF138701=DUF4201=PU(16.0=45.9)
A:
NA
C2:
PF0636711=Drf_FH3=FE(29.9=100),PF138701=DUF4201=FE(46.2=100),PF051307=FlgN=PU(54.4=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGTGGTTCATTCTGTGGA
R:
CGTCCTCTAACAGAGCTCCGA
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]