RnoINT0061634 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38645073-38647322:+
Coord C1 exon
chr3:38645073-38645183
Coord A exon
chr3:38645184-38647172
Coord C2 exon
chr3:38647173-38647322
Length
1989 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCTGGAATCTTTGTGTTTAGAAG
3' ss Score
3.95
Exon sequences
Seq C1 exon
GTGGCCTCTATGCAGTTTATTAATATTGTAGTCCATTCGGTAGAAGACATGAACTTCAGAGTTCATCTCCAATATGAATTTACCAAATTAGGCCTGGATGAATACTTGGAT
Seq A exon
GTAAGTACCTTTTTTGGTGTCATTTTAAGAGTGGATTTATTGCCTCTTCTCAGAGGTTCGTTTCTTTAGTAACTAGAGAATGCCTAAAGAGTTTTGTGGTCTCACAGTTGCCATGTAAGTTACAGGGAACCAATTTGAATGATGGAGTTTGCCAGCAAAGCTGGACTATTTACAGAATTCCTGGGACATCTGGGGGGTCTACTGCCTGCAGCCCTTTGTTACTGGAGTCAGACATTTCCGGGAGCATTGTCTCAGCCTTCCTTCGCTTTTGAACTCTGTCTGGGTCAAGTCTTGTGGCATCCTTCATCAACACTGAAGAACAGTTTTTATTTGGGGCAGCCTTGGGACCCAGGCAACATCCAGCCAAGACTGTTGGTGAATGAGTTCATGTTTAGAGCATTGAGAAGTAATGAGGAAATGACACTTCCTCCTGATGCTGTTAATTCTGTTTAAAGCACTTGTTGCTTTTGGACACGTGTCTGCACTTCTTGAGAGAAAGAAGACTTAGTTTCTTTTTCTCCCTGCCACACAGAAGTGCCCAGCCAGTTCCCTGAAGACTTTAATAAAGAAACAGAAAGTGTTTGTGGTACTCACAGATGTGCTCCCCCTCTGTCACTGGGAATCTTATGCTTTCCCTTTCCTTTGAGTGGTGCAGTTGAAGTCCCGGTGGTAGGCCATGGATGGCTGATGTAGATTTCAGGGATTTCCAGAGTTCACTTGCCCATGTTTGTTAGGCATGAACCCAGGAAACCACACACCTTGCACCCACCTTATTGGAGGGTAGAATACGTTGATGCTGACCCCTGTGCACACCTCTGGCAATGCTTTGGGGCTGAGATTTGTCTTCTTCATGCACCTCACAGATGGCAGGATGTGAATGAAGATCTGGAGTGCAAGTTCTCATTTCTGGTGGAGGTTCAGTCTGCTTTGGGCTGTAGGTTGTCACAGCAGCTAGTGACATTGGTGCACGTCCAGTAGTTGCAGCCAACCTTGGGAAAGTCCCTTATCACTGCTCCTCTGTTGCCCTCTTGTTTTCAGCTCTAGATTCATATTTCTTTCTTTCTTTTTTGACTTTTAAAGTAAGACGGAATATACTCGGGTTAAAGTAATTTAAACTGTTAAATTAAACCTAAGAGAAGTGCTTTTCTTAAGAAATCATGTAATCTAAAATTTCTCTTAAAAATTCCACACCCTGTCCAACCCTTCGTTAGTTATGTTACGTTGGGTCTGGACCCTGATGGATAGAAGTCATTAGAAGAACACCATTCTATGCATCTGATAATATACGTTTTCTGTATACAAAGACAGCCTTCTTTGCAAATGATCGTTCATATGTTCATTCACTTATTGGCATCATCCGTATTCTGACTTTAGAGTCCCCAGAGAAAGTCATAAGGTGGGACTCTCATGGGGAAGAGTCACTGATTTCTTAAGCCTCTGGCGTCACCTGAGAAACTGCTTCCTCAGTCACTCTGGTATCCTTGGGCTAGGATATAAGGGAACTGGAGGACCCTTTCTGATTCATGCGTTGGGGAGCTTTGAGCTGTTCATTCAAGGCACTGTCTTGGGAAAGGAATCATATAGGAAGAGTTCTGGCAATGTGTACTAAAGCTGAGTGTGTGTACAATCCATGGCTCCGAGCTAACTCTGTTTGGCTCCTAGCCACTCTCACCTCTGCCTAGATGCCCCTTAGATTTCACAGGGCGTGTAATTATTCCATCTCAAACCCTCTTTTGTAATGTCTGGTTTACTTATATAAAAATAGTCTAGAATGTCAAGTATTTGAGGACAGTGACTCCCTTCCCACCCTTGGTGTGTGTCTATATGTAAATTGGAAACAGTAGGGTCATACCTTGGTCATACGGAGGATGCGTTAAACTCTTGTGGGGAACTGTAGGCTACTTGTAACAGATTATGTAGAGGGTTGGGAAATTGTGTCCTACGTCCACAGATAATTCATCCTACCTTCTCTGGAATCTTTGTGTTTAG
Seq C2 exon
AAGCTGAAACACACAGAAAGTGACAAGCTGCAAGTACAGATCCAGGCTTACCTGGACAACGTGTTCGACGTGGGAGCTCTGTTGGAAGATGCTGAAACCAAGAATGCTGCCTTGGAGCGGGTGGAGGAACTGGAAGAAAACATCTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(17.6=100),PF061486=COG2=FE(18.9=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(23.9=100),PF061486=COG2=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTCTATGCAGTTTATTAAT
R:
ATGTTTTCTTCCAGTTCCTCCACC
Band lengths:
254-2243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]