RnoINT0061632 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91273091-91274896:+
Coord C1 exon
chr10:91273091-91273201
Coord A exon
chr10:91273202-91274746
Coord C2 exon
chr10:91274747-91274896
Length
1545 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCCTACTGTCTGGGGACAGAGG
3' ss Score
4.74
Exon sequences
Seq C1 exon
GTGGCTTGCATGCAGTTCATCAACATCGTGGTACACTCGGTGGAGAACATGAACTTCCGTGTCTTCTTGCAATATGAGTTCACTCACTTGGGTCTGGACCTGTACTTGGAG
Seq A exon
GTGAGCCCGGTACCCCGCTCCTGTCCCCCCTGACTGAACTACCCACCCACTGTGGAATGTTTAGTATGTAGTTAGCAGGTCTTCAATTCAAGCCTTGGCTCTGAGAACTGGGCTTGGAGATACATAGTTGCAATCCTGTCACTTGGGAGGCTAAGGCAGGAGGAGTTCACGTTCAAGTTCCGTCTGGGGTTTACTGTCCCTCCCGCCCAAATGATAAAAACCTACCAATAAACAGAATCCTACCCCCATCACTTGCTAACCGTTTGACCTTGTATGCACCTGTTCATCCTCCTGAGACTATTTGCCTGTCAATCACAGAGGTGACAGTGACTCCAAATGTGTAGAGGAGCCCCTGATACATGATGGATACTGTAGCATCTGTCATGGAGATCCTGGAACAGGCTCAGGTGGCCCTGTGTCTGACCCAGGAGCATCAGTCCAGTCAGATGCTCTGACCACAGCTTATGATGAGGAACTAAGAGATACGAGACAGAGTGAGGAGCTGGCTAAGGCGAGAGGTCTGGGTCTTAGGAAGAGGGGACAGAGGAACCCATGAGCAGAGAGAAATCACAGCCTCTGGGAGGCTTTCTAGAGGAGTGAGGCCTTTGTGGTTGGAGTTCCAAAAGCTAGGACTGGCTAACAGTTAGAGAAGGCTGGGCTGGTATAGCCGTACAATAGGATATGGTAAATCTGGGTCAAGACATTGGCTTCATGGCTGATCCTTGAAAGGAGAGAGAAGCCAGAGGCAAAAGGCTAAGTATAGAGCTGGAGAGATCATGTAGCAATTAAGAGCACTTACTACCCCTGGAGAGGATCCAGGACCCTCTGCCTCCCACCACCCATATCTGGTGGCTTCCACTCTCCTGCGACTCCAGTTCCAGGGGATTGGATGTTCTCTTCTGGCCTCATGTGGTGTCTGTAAACTCATACAGGGCCGTACACACATGCATAAAAAAGCTGACCATTATGTGACTTTTACAAATAAGAAATGTTGCTGGGTGGAAGTGATAAACATCTTTGATCCCAGCACCACAAAAGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGGGCTAGCTTGGTCTGTTCCAGGAACAGCCAGAGGTGCATAGTGAGACCCTGACTGGAAACAACACACACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACAGAGGGAGAAGAAAAGAAAAGGAAAGGAAAAAGAATAAAGAAAGGAATGGCCAGAATGACTAAATCCATAGTTGTGGGAAGTACGATTCATAGCAGCCAGGAGCTGGGGGGATATAATGGGAAAGGAACCTAACTGGTATAGGGTTTCCTTCTTGGGTCCTGAGCTTCTAGGAAAGAAACAACACACCTTAAAATAGTGAATTATATCAGTCAAAATAAAAATCAAACTAGAGCTCAAGTACTTTCTCCCGGAAGTGGTGGTTGTTGGATAGAACCACCCCCCCCACCTCAGACCTCACTATACTCCTACTGTCTGGGGACAG
Seq C2 exon
AGGCTCCGGCTCACCGAGAGTGACAAGCTGCAGGTGCAGATCCAGGCATACCTGGATAACGTTTTTGACGTGGGAACACTGTTGGAGGAGACCGAGACTAAGAATGCAGTGCTGGAGCACATGGAGGAGCTGCAGGAGCAGGTGGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(18.2=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(24.7=100),PF051307=FlgN=PU(50.6=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGCATGCAGTTCATCA
R:
CGTTGCCACCTGCTCCTG
Band lengths:
260-1805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]