MmuINT0065079 @ mm10
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103190296-103192164:+
Coord C1 exon
chr11:103190296-103190406
Coord A exon
chr11:103190407-103192014
Coord C2 exon
chr11:103192015-103192164
Length
1608 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCCTGCTGTCTGGGGACAGAGG
3' ss Score
4.93
Exon sequences
Seq C1 exon
GTGGCTTGCATGCAATTCATCAACATTGTGGTGCACTCTGTGGAGAATATGAACTTCCGTGTCTTCCTGCAATATGAGTTCACTCACCTGGGTCTGGACCTGTACTTGGAG
Seq A exon
GTGAGCCTTGTACCCCATCCCTGACTGAACAGCCTACTCACTGTGGGGTATTTAGTATGTAGTTAGCAGGTCTTGAGTTCGAGCATCGGCTCTGAAAGCTGGGCTTGGTGACACATACCGGCAGTCATGTCACTTGCGAGGCTAAGGCAGGAGGAGCTCATGTTCAAGTTTAGTCTGGGGTTCACTGTCCCCCCTCCCCGCCCAAATGATAAAAACCCCTCAAATAAACGGAATCCCACCTCTGTCACTTGGTAGCTGCGCAGCCTTGTATGCATCTGTTCATCCTTCTGAGTCTGTCTGCCTGTCAATCACAGAGGTGACAATGACTCCAGATGTGTAGAGGAGCCCCTGGTACATGACGGATACTATAACATCTGTCACCGAAGTCCTGGAACAGGCTCAGGTGGTTCTGGGTCTTGACACAGGAGCATCAGTCCCGTCGGATGCTCCGATCTCAGCCGGTGATGGGGAACTCAGAGATACTGGACAGAGGGGGGAGCTGGCTCAGGCTGGAGGTCTGGGCCTTGGGAAGAGGGAACAGAGGAACTCGTGAGAAGAGAAATCACAGCTTCTGGTCTGGTTCCTCTAGGAGACTTTCTAGAGGGGTGAGGCCTTTGGGGTTGGATTTCCCCAACCAAGCTAGGACTGGCTAACAGTTAGAGGGGGCAAGGCTGGTACAGCCGTGCAATAGAATGTGATACATTTGGATCAAGCATGTGCAGTCAGGCATTGGCTTCAACATGTCTGACCCTTGAGAGAGAAGCTAGATGCAAGAGGCCAAGTGTAGGGCTGGAAAGATTATGTAGCAATTAAGAGCACTTATTACTCCTGGAGAGGACCCAGGTCCCTGGACCCTCTGCTGTTCCCAGCACCCACATCTGGTGGCTTACAATCTCCTGTAACTCAAGTTCCAGGGGATCAGATGGCCTCTGAGGACACCTGAACTCATGTGGTGTTCATAAACTCATACAGGGACACACACATATGTATAATATAAAAGCTGACTATTATATGACCTTTAAAAATAAGAAATGTTGCCAGGTGGTGGTGGTAAACATCTTTAATCTCACTCAGCACCATGGAGGCAGAGGCAGGTGGATATCTGTGAGTTTGAGGCCAGCTTGGTCTACAGAGTAAGTTTCAGTACACTCAGAGGTGCATAGTGAGACCTTGACTGGAAACACGTGTGTGTGCCCATGTGCACACACACACACACACACACACACACACACACACACACACACACGAGGGAATGGGAGGGGAAGAGGAAGGGAGAGGGGAAAGGAGAAAAGAAAAGGAAAAAGAATACAGAAAGGAATGGCCAGAATGACTAAACCCATAGCAGGAGGAAGTAAGATTCATAGCAGCCAGGAGCTGGGGGGAGATAATGGGAAAGGAACCTAACTGGTCTAGGGTTTCCTTCTTGGGTACCGAGCTTCTGAGAAAGAAGTAACCTTAAAATAGTGAATTGTGTGGTTCATGAATTATACCAGTCAAGATAAAAATCAAACTAGAGTCCTAGTACCTTCCTCCGGGTAGTGGTGGTGGTTGGATAGACCTCCCCGCCACCACCTCAGACCTCACCCTACTCCTGCTGTCTGGGGACAG
Seq C2 exon
AGGCTCCGGCTCACTGAGAGTGACAAGCTGCAGGTGCAGATCCAGGCGTATCTGGACAACGTTTTTGATGTGGGGACATTGTTGGAGGAGACAGAGACGAAGAATGCAGTGTTGGAGCACATGGAGGAACTGCAGGAGCAGGTGGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805:ENSMUST00000042286:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(21.6=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTGCATGCAATTCATCA
R:
CGTTGCCACCTGCTCCTG
Band lengths:
261-1869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types