HsaINT0065099 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45240476-45241230:+
Coord C1 exon
chr17:45240476-45240625
Coord A exon
chr17:45240626-45241128
Coord C2 exon
chr17:45241129-45241230
Length
503 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
ACCATGTGCTGGTGCTACAGCTG
3' ss Score
5.54
Exon sequences
Seq C1 exon
AGGCTTCGGCTCACCGAGAGTGACAAGCTGCAGGTGCAGATCCAGGCGTACCTGGACAATATTTTTGATGTGGGGGCGCTGCTGGAGGACACAGAGACCAAGAACGCTGTGCTGGAGCACATGGAGGAACTGCAGGAGCAAGTGGCGCTG
Seq A exon
GTGAGAGTGGGTCCTGACCCCAGCCCAGCACATCATAGGCCCACAGGGCACACGGGCCACAGGGCCACGCAAGCATGGGCACTGGGCAGCAGACAGTGTTATAATTGTGCATTGGAGGTGCTGCCTGCCTGGCCCCAGAGCCTGGCCTGAATCCAAAGCCTGAATCTGTTGGGTGTCTTTCTCAATGAGTGTGGGTGAGCACCCTCACTGACAGGCCCCTCCTCTACCCAGGCTCAGACCCCAGGTGAACTGAAATGGGTGCCTGGGGCCCCTCCCAGCTCAGTCTCCTCCTCTCCCTCCACCTCCCGCATCACTGGTACCTTGGTTTCCTCTCCTTATTTGCTTGGGTTCGAGTGCCAGGCTCGGCCCACCCTTGGCACCTGGGCTGAGCGGATCTGGGAGCCTCCCCCAGTCTTCCAGGCAGGCATGCCTGATGCCGCCCCCTCACCGGCGGTGCCAGTGCCGGGCTGCGGGTCGGGGCTCACCATGTGCTGGTGCTACAG
Seq C2 exon
CTGACAGAGCGGCTTCGGGACGCGGAGAACGAATCCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAGGCGCGCAAGGAGTTGGAGACCCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.423
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(32.0=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(21.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGTGACAAGCTGCAG
R:
CGCAGGGTCTCCAACTCCTT
Band lengths:
238-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development