RnoINT0061610 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91274747-91275519:+
Coord C1 exon
chr10:91274747-91274896
Coord A exon
chr10:91274897-91275417
Coord C2 exon
chr10:91275418-91275519
Length
521 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
ACCATGTGCTGGTGCCACAGCTG
3' ss Score
5.35
Exon sequences
Seq C1 exon
AGGCTCCGGCTCACCGAGAGTGACAAGCTGCAGGTGCAGATCCAGGCATACCTGGATAACGTTTTTGACGTGGGAACACTGTTGGAGGAGACCGAGACTAAGAATGCAGTGCTGGAGCACATGGAGGAGCTGCAGGAGCAGGTGGCAACG
Seq A exon
GTGAGAGCTGCTCACAACCTAGTCCATCACACAGTAGGCCCACAGGAAGGCTGTCCTGGGGTGGGCTCCTCTTGTGCAGCAAGTACTGAATGGAAGGCAGAGTTCTGGGTGTGGACTGGGAGCAGCAGTCTGCCTGAGTTTGCCCTCAATCCAAATCCAGCGTCCTTTTGGTATCTTTCTCAATGAGTCTTTAGGGACCGCCCACGCTGCGTGGGACTTGTGCGCAAAGCAGGCACCTTCTCCCTGAAAAGATTCTAAATCCAAACTCCAGAGAATTGGGTCCTGTGGTGCCTCTCAGCACAACCTTCTCCTCTACCACCTTTCTTCGCACTAGTGCCTTGATTTCCCCTCCTAATTTATATGGGTTCAGGTGCCAGGCTCGGCCCGCCCTTGGCACGCTAGGCCAAGCGGATGTGGGAGCCTCCCCCAACCCTCCAGGCAGGCTTGCCTGATGCCGCCCCCTCACCGGTGGTGCCAGTGCTTGGCCGCGGGTGGTAGCTCACCATGTGCTGGTGCCACAG
Seq C2 exon
CTGACAGAGCGGCTTCGGGACACAGAGAACGACTCCATGGCCAAGATCGCTGAACTGGAGAAGCAGCTAAGCCAGGCTCGCAAGGAATTGGAGACCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(24.7=100),PF051307=FlgN=PU(50.6=86.0)
A:
NA
C2:
PF0636711=Drf_FH3=FE(16.7=100),PF051307=FlgN=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGTGACAAGCTGCAG
R:
CTCAGGGTCTCCAATTCCTTGC
Band lengths:
238-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]