GgaINT0047753 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37157122-37158379:+
Coord C1 exon
chr7:37157122-37157271
Coord A exon
chr7:37157272-37158277
Coord C2 exon
chr7:37158278-37158379
Length
1006 bp
Sequences
Splice sites
5' ss Seq
CACGTTAGT
5' ss Score
0.44
3' ss Seq
GTTTCTCTATTCTATGATAGTTA
3' ss Score
5.94
Exon sequences
Seq C1 exon
AAACTGAAACACACAGAGAGTGACAAACTGCAGGTGCAAATCCAAGCGTATCTGGATAACGTTTTTGACGTGGGAGCATTACTGGAGGATGCTGAAACCAAGAATGCAGCCTTGGAAAGAGTTGAAGAACTGGAAGAAAACATTTCCCAC
Seq A exon
GTTAGTACAAAACTGAAGTCACTTTCCCCTGTGGAGTGATGCACAGCCTGCTCTGCGTGTGTGCTGCAGTACTGCCCTTCTCTTTTGGGAGGTGGACATGCAGGTGTAGCTAGATAGAATCTCTGGGGTGAGGAGTGTTGAGGGAAGCCTGTGGACTACTGTGCTTCCGTTATGGGGGATGATCAGATACTTGGCAAATGTCTCGTGCAGGTAAACTTCCTAGGTGCTTCCTTGCTGTATTTTGAACCTGATGTGGTGCATATTTGTGTTAATGGGTGCACTGCTTGCTTCAAAGATTTGTTCGTAAGGTATTTATTGACCTGATGAGAAAATGTCTTTTTCTGCCTTTTAATTACTTTCCTATTTCACTCAGTCCCCAGGTTGCTGTAAAGGACTAGAATGGCCTTTTTAATGTGGGGCTCACCAAGCAATTTGTGTGTATGTCAAGGGACAGTTTGGTGTGGGCTGTGCAGCGCAGAAACAGTGTGGCTTTCAAACCCCACGGGTTTTTGGGGCCTGCCAAAGATAAAAATAAATTAAAAGACCACAGGGGAAAAATAACAACATGCAAATTCTCTTTCATTCATTGCTTATTAAATTAGCTCTGTTGCGAGAAGACGTATTTATAGGTGTTACCACTTCAGCACCTATTGACTTTGCAACAGTGCTGTTATAATATTCTGTGTTTTTCCAAATAATTGCATTTTAAGTACTTTACTATAGGGTAGGCTCTCTTAACTGGACAGGGTCACGAGTGCAGTCCAGCCAGGTTGCCTGCTAGTCATAGCTGAAGGGTAACGCTCACCATCACAGGACCCTGCAGCTGGGCACTTAGTGCCACCTGCCTCCACACACACAGGAACCCTTCCTCTTTCCAAAGGAAGACTTGAGGATTTGGTGGGGTATCAATGGTTTACCACATACCACTGCTGCAACAAGTGTTGATGATGTTTTGTTTGAGAAAGATGTCGTTACTTACATAATCTGTTTCTCTATTCTATGATAG
Seq C2 exon
TTATCTGAAAAACTCCAAGATACAGAAAATGAAGCCATGGCAAAGATTGTGGAACTGGAAAAACAGCTTATGCAGAGGAACAAAGAACTGGATGTGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(23.9=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTGACAAACTGCAGGTG
R:
CCGAATCACATCCAGTTCTTTGT
Band lengths:
238-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]