HsaINT0065125 @ hg38
Intron Retention
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152614851-152617192:+
Coord C1 exon
chr2:152614851-152615000
Coord A exon
chr2:152615001-152617090
Coord C2 exon
chr2:152617091-152617192
Length
2090 bp
Sequences
Splice sites
5' ss Seq
CATGTAACT
5' ss Score
5.36
3' ss Seq
TTCTTTTCAAAATTTTACAGTTA
3' ss Score
7.97
Exon sequences
Seq C1 exon
AAGCTGAAACACACTGAGAGTGACAAGCTTCAAGTCCAGATCCAGGCTTACCTGGACAATGTTTTTGATGTAGGAGCTCTACTGGAAGATGCTGAAACTAAGAATGCTGCCTTGGAGAGGGTGGAAGAACTGGAAGAAAACATTTCTCAT
Seq A exon
GTAACTATATCTCAGAAAAGGAAAAATTGCTTACATTTCAGCTGGTTGCAAAGCAGAATTAATGTCAGCTTTTATGGTGGTAAATTTAAGGATTTGGAGTATAGGAATAGGCCATACCCTGCAAGAGAGAGCTATCAGAAGCTGTTCTGTGTTTTTTCCAAAAAGCAGATGTGTTATGTAAAATGAAATAGAATCTGTTGCTTTGCTTTAGCTCACTTACCTGCTCAGTTTCTGCTGAGGTGCATTTCCTGGCAGTCTTGCTTACAGGCTCAAGCAGAGTGGGGGTGTTTGATGATTGGCATTACGTAAATGATTAGAGGGAAATTAAATATGAGAATTTGGCCTGAGGCGAAGAGGTATCTTCTTATCAACTATGTCCACACAAACCCATGGACAGGATTAGCTGGTGTCTCTGTGATGCATGTCTGAACATTCCTGTCTTACGGTACTCAAATTCTTAATAGAGTCATTTCAACAATAGGCATTTTCAAGGACATCGGTGTGCTTTCTCATATATCCTGTTCTTTGAAGAATGTCCTCAGTATCGTTGTCAGCTCTATCACAGGACAGGGTCTCATTTTTCTTTGAGGGATTTTTCTTGCCATAGACTGATTTGAATATGACTCTAAGGGCCTTTAGAGATTATTTGTTCATTCATTAACCACATATTTCAGTAGTAAAAGAATTAACAGAAAAATGGTGCTTCTCAAAAACCCAAGCATTATGAAGACCAAATTCTTTTGGTGAGTCTGGTGAGCACTTTCCTTGATTATGAAATGAAGTGTCTCCTTTTGGAGGATTATTATTTTCTCCTTTGAACAGTTCATTTATTTTTCTCCACATGTTTTTTAAAGAGTGCTGCATATGCTCAGTTTCCTTCACCTTTCCCCATCACTGTGAAAATGGGTCTCTTCATGGCTGTGGGTAAGCCAAGTTGGTGAGCCAAAAACCCTCCCTTTAAAAGTGCCGCTATGACCCAGCTGGCATCCGCTTAAAAAGAGAATTTTACAGGCCCAGTATATCTTCCCTTAGAAGATTTGTGTTATATGCTGAACCCAATCAGTGTAAATCTCCACTCTTCCTCCTTACCTTGCCTCCCTGGTTTTCTTTACTTGTAATGAATTTAAAGGAGATGTTAGAAATCAGAAGTTGCTCAGTGTTAGAGCCCTATGTGAAAAGCAGCTGTTTAACACATGGCTCACCCTGTCTTTCTCCTGAAGCCTCAGCCAACATTGCATGACCATACTTACATGTCCACTTTTGTAGCAGCAATCTATTTGAATGGCCTCCCCCAAATAACTTTTATTATTATTATTATTTTTGTGGGTTTTTTTTTTTTTTTTTTTTGGAGATAGAGTCTTACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTGGTAGCTGGGATTACAGGTGTACTCCACCACACCTGGCTAATTTTTGTATTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGGCAACCAACTTTTATTACTTGCATAGTTTGGTCAAACCAAGCAGTAGTTGTTTTTCAACTGGCTACCTAGATTGAAAGAACCAAGTTTACTGTGTTACCAATTTTCAAAAGCTTTAGGCTGATGGCCCTTTCTTGGCATGGAGTGGGGGATGGAGGTGGACTTTCCCTCCTCTTTCTCCTTACTTTCCTCTACCCTTGCTAGCCCCTGCAGAAATGGAGGGAGGCACACTGTGTATGTTGAACACTAAGGAGCAGACATGTGGGTCTTATTAAGAATCATGTCTAAGTTATCAATTCCTGGTAGAAGCAAATATGTATTCAGAACCATATTATAAACATTACCATTTCCAGAAAACAACTTGCGGAACACATGCAGGGCCCTGGTCCCTAATAATCTTGGAGCTGCACTTTCTGAGAACTGAGGGCTGATCAAGATGATCCTGTATTGTGACAGCTTTCTTTTCAAAATTTTACAG
Seq C2 exon
TTATCTGAAAAACTGCAAGACACAGAGAATGAAGCCATGTCCAAGATTGTGGAACTGGAAAAGCAACTCATGCAGAGGAACAAGGAGCTGGATGTCGTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827:ENST00000288670:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(23.9=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development