DreINT0069067 @ danRer10
Intron Retention
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4801087-4801622:-
Coord C1 exon
chr9:4801473-4801622
Coord A exon
chr9:4801189-4801472
Coord C2 exon
chr9:4801087-4801188
Length
284 bp
Sequences
Splice sites
5' ss Seq
CATGTTAGT
5' ss Score
-2.52
3' ss Seq
GATTCTTTGTGGTTTTCTAGCTG
3' ss Score
7.95
Exon sequences
Seq C1 exon
AAGCTGAAGCACACCGAGAGCGATAAGCTGCATGTGCAGATTCAAGCATACCTGGATAACGTGTTTGATGTCGGAGCTCTGTTAGAGGACGCAGAAACCAAAAACGCAGCGCTGGAGAGGGTGGAGGAACTAGAGGAGAACATGTCTCAT
Seq A exon
GTTAGTATTGTGCTTTCATTATATAACGGCCAAAAAATGTTGTTCATTTGCAGTTACTTGTCAAGTACTTGTACTACAGACAGAATAGCCCCTTTCACACATACGCACCTTTCCGGAAAATTACCGACAATTTTCCGGGAAGGTCTATATGTGTGAACGGGCCCTTTTTGAAAATACCGGTACATTCGTTCCGGCTATTTTCCGGAAAGAGAAGATATCATGACTTTTTTTTTGTAAAGTCTTCAGCTGATTTACTGACTGAGTGATTCTTTGTGGTTTTCTAG
Seq C2 exon
CTGACAGAGAAGTTACAGGACACCGAGAATGAGGCAATGGCAAAAATTGTTGAGCTGGAGAAACAACTCATGCAAAGAAATAAAGAGCTGGACTCTCTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586:ENSDART00000016814:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.246
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(29.9=100),PF138701=DUF4201=FE(46.2=100),PF051307=FlgN=PU(54.4=86.0)
A:
NA
C2:
PF0636711=Drf_FH3=FE(20.1=100),PF138701=DUF4201=FE(31.1=100),PF051307=FlgN=FE(41.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGAAGCACACCGAGAG
R:
AGTCCAGCTCTTTATTTCTTTGCA
Band lengths:
244-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]