RnoINT0061635 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38647173-38649047:+
Coord C1 exon
chr3:38647173-38647322
Coord A exon
chr3:38647323-38648945
Coord C2 exon
chr3:38648946-38649047
Length
1623 bp
Sequences
Splice sites
5' ss Seq
CATGTAACT
5' ss Score
5.36
3' ss Seq
TCCTCGTCACAATTTCACAGTTG
3' ss Score
5.49
Exon sequences
Seq C1 exon
AAGCTGAAACACACAGAAAGTGACAAGCTGCAAGTACAGATCCAGGCTTACCTGGACAACGTGTTCGACGTGGGAGCTCTGTTGGAAGATGCTGAAACCAAGAATGCTGCCTTGGAGCGGGTGGAGGAACTGGAAGAAAACATCTCTCAT
Seq A exon
GTAACTGCATCTCAGAGAGGGAAATGCACTGGGGACCAGAGTGGGCTAATGCTAGCTTTTGTGATAGGAAGTGAAAGGATTTGGAGTGGAGGAATGAGCAGAACTCAAGTCATCTAGCTCTTGACTGGTCTCTACTTACCTTCCTGTTCCATTTCTCCCAAGTCACACACTGGCAGCCCTCGTGGCCAACACAGAACAGGAAGGTTGACAGTGTAAGACATAGAAATGAAGAGAGGGACTGTGGCCTCAGGAAGGAGTCTCTGACGATGACCCACCTTCTCAAAGTGCCATCAGAGTCTGTGGGATAGGACTGTCATGTCTCACAAATCTCTGTGCTCCTGTCTAAGCCCTGCCTGAGCTTCTGCTCAGGTCCATAGCAACTGTAGACGTTTTATGGAAAATCACTGAGCTTTGTCAACTGTGGTCTTCTCTGAAGAATCATGTCTGCTCAGTGCCCTGATCTTCTTTAAGGGAAGTTTGTTAACCACAAAGAGGTTAATATTAACCTAGAGGCTTTGAGATATTCCCATATTTCCTATTGAAGAGTAAATGGAGAACAATAGTTTTCAAAAACCCATGCCTTGTGAGGGCTAAGTTCTTTTCACCGTTGCCCAGTGGTGAGCCTGGGGCCTTGTGCATGTGAGGACAGTACTGTACCCACTGAGGTCTTGAAAACAAACTTCCCGTCTTGATTGGATTGATTGGAATTGTCCTTTACTGTGCAGAGAATTGTCTCTATTTGTAGGAATAGTATTTCTCTCTCAGCAGAGTGGCTTTGTTTCCCACCACACTTTATTTTAGAGTATCACATAGGTTAATTTCACCCCTTATCACTGTGAAAACAGGGCTCCCATGGCTTATATTAAAACAAGTTGGTAAGCCCAAAGCCGCCCCTTTGAGAAGCTTTGCGTTGACTTCATTGGCATCTTCTCAGAGGAGTTTACAGGGTCCACTGTTTCCTTTAAACGTTTTGTTTTCTTTTTCCTCTTCTCTCTCTGAAATTACACTCTTAACTTGTAAATATCTAATCCCCTGTCTTGCCTCAGTGGATGTCTTTGCCTATTATTATGTCCAAAGGGAAGTCAGAAGTTTCTTGATTGTAGAACTTTATATGAAAACTAGCTCCCTTCCTCCCCTCATCCCTCTCAACCAGCACTGCATAGCCTTTCTGTATTGATTTTTATAAAAATAACCATTACTGGGTAGTTTGGGCTGAAGAAAGCCACAGTTCTTTGTGTAGCTGACTAAAATGGTACAGCCATGTTTTCCAGATCAACAATTTTCAGAAGCTCTTTGGGCTTGGGAAGGTGGCCTTGCGCTCTCCTTTACTTTAATTTGTCCTACACTTAGCTCCAGGACAGGAGAGAGGTATGATTGTATATGTTCAAACACTGAAAGGCTGCTGTGTTTTATACATGCCACATATACATCATTTATTCCTGAGAGAAACAAATATGTGTTCAGAACCATAGCATAAAAATTAATGTTTCCAGAAATTAACTTTTGGAATATATGCAAGACTCTCGTGGGTGCCAGGCTGACTAGGATATATGATTCTGAGGACCAAGGACCCGATCAGAATGATCTGTGTTGTGACTCTGTTTCCTCGTCACAATTTCACAG
Seq C2 exon
TTGTCTGAAAAGCTGCAGGACACGGAGAATGAAGCCATGTCCAAGATTGTGGAACTGGAAAAGCAACTCATGCAGAGGAATAAGGAACTGGATGTCGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(23.9=100),PF061486=COG2=FE(25.8=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(16.1=100),PF061486=COG2=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGTGACAAGCTGCAAGT
R:
TCCAGTTCCTTATTCCTCTGCA
Band lengths:
230-1853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]