MmuINT0065080 @ mm9
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103053329-103054094:+
Coord C1 exon
chr11:103053329-103053478
Coord A exon
chr11:103053479-103053992
Coord C2 exon
chr11:103053993-103054094
Length
514 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
ACCATGTGCTGGTACCACAGCTG
3' ss Score
4.01
Exon sequences
Seq C1 exon
AGGCTCCGGCTCACTGAGAGTGACAAGCTGCAGGTGCAGATCCAGGCGTATCTGGACAACGTTTTTGATGTGGGGACATTGTTGGAGGAGACAGAGACGAAGAATGCAGTGTTGGAGCACATGGAGGAACTGCAGGAGCAGGTGGCAACG
Seq A exon
GTGAGAGCCTGCCTATCACACAGTAGGCCCACAGGAAGGCTGCTCTAGGGTGGGCTCCTCTTGTGTGTGTAGCAAGTACTGAATGGAAGGCAGAGTTCTGGGTGTGGCCTGGGAGCGGCAGTCTGCCTGAGTTCGCCCTCAATCTGAATCCAGCATCCTTTTGGTATCTTTCTCAATGAGTCTTTAGGGAGCGCCCACGCTGTGTGGGACTTGTGCGCAAGGCAGGCACCTTCTCCCTGAGAAGAGTCTAAATCTCGAATCGAGTGAATTGGGTCTTGTGGTGCCTCTCAGCACAACCCTCTCCTCTACCACCTCTCTTCGCACTAGTGCCTTGGTTTTCCCTCCTAATTTATATGGGTTCAGGTGCCAGGCTCGGCCCACCCTTGGCACGCTAGGCCAAGCGGATGTGGGAGCCTCCCCCAGCCCTCCAGGCAGGCCTGCCTGATGCCGCCCCCTCACCGGCGGTGCCAGTGCCTGGCCGCGGGTGGTAGCTCACCATGTGCTGGTACCACAG
Seq C2 exon
CTGACAGAGCGGCTTCGGGACACAGAGAACGACTCCATGGCCAAGATCGCTGAACTGGAGAAGCAGCTAAGCCAGGCTCGCAAGGAATTGGAGACCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-Fmnl1:NM_001077698:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(29.3=100),PF051307=FlgN=PU(50.6=86.0)
A:
NA
C2:
PF0636711=Drf_FH3=FE(19.8=100),PF051307=FlgN=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGCTCACTGAGAGT
R:
CAGGGTCTCCAATTCCTTGCG
Band lengths:
247-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: