BtaINT0063149 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45512883-45513712:+
Coord C1 exon
chr19:45512883-45513032
Coord A exon
chr19:45513033-45513610
Coord C2 exon
chr19:45513611-45513712
Length
578 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
ACCATGTGCTGGTGCCACAGCTC
3' ss Score
5.26
Exon sequences
Seq C1 exon
AGGCTTCGGCTCACGGAGAGTGACAAGCTGCAGGTGCAGATTCAGGCCTACCTGGACAACATCTTTGACGTGGGCGCGCTGCTGGAGGACACTGAGACCAAGAATGCTGTGCTGGAGCACATGGAGGAGCTGCAGGAGCAGGTGGCCCTG
Seq A exon
GTGAGAGCTGCCCCTGAACCAGCAGAGAGCACCCCACAGAGCCCCCCACGCTGATATCAGGCACCGGTTCTAGGTGTGAATGGGGGCCCCCTGAGTTTGACCTGAATCCTTTGGGTGTCTCTCTCAATGAATGTTCATTGAGCTCCTCCCCTGGGTTTAACCTGAATCTTTTGGGTGCCTGGGCACGACTGGAGCGACTTAGCAGCAGCAGCAGCTGAATGAATGTTCATTGAGCTTCTCCCCTGGGCTGGACCTCTGAGGAAGGCAGGTCCCCTCTCCTCCAGGGGCTCAGACAGCAGGCCCTGATTTGGGTGGAGCTGGGTACCTGGGGCCCCCTGCCAGCCCAGTCTCCTCTCCATCTCCCTCCTTCATCAGTGGTGTCTTGGCTCCCCCTCCTGAGAGAACTTTAGTGCTCTCAGGACTTCCCCTACTTGGGTTCAAGTGCCAGGCTCCGCCAGGGCTAAGCACATCCGGAAGCCTCCCCCAGCCCTGCAGGCAGGCATGCCTGGTGCCACCCCCTCAGCGGCCGTGCCAGTGCCCGGCTGCGGGTGGGAGCTCACCATGTGCTGGTGCCACAG
Seq C2 exon
CTCACAGAGCGGCTTCGGGACGCGGAGAACGAATCCATGGCCAAGATCGCGGAGCTGGAGAAGCAGCTAAGCCAGGCCCGAAAGGAGTTGGAGACCCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(26.6=100),PF029949=Transposase_22=PU(26.7=56.0)
A:
NA
C2:
PF0636711=Drf_FH3=FE(17.9=100),PF029949=Transposase_22=FE(31.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGAGTGACAAGCTGCAG
R:
GCAGGGTCTCCAACTCCTTTC
Band lengths:
238-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development