HsaALTD1051869-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000229619 | MBNL1-AS1
Description
MBNL1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44584]
Coordinates
chr3:152262616-152269539:-
Coord C1 exon
chr3:152269439-152269539
Coord A exon
NA
Coord C2 exon
chr3:152262616-152269072
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCATT
5' ss Score
4.32
3' ss Seq
CTCTCACATTTTTTTTTCAGAGG
3' ss Score
9.2
Exon sequences
Seq C1 exon
AACCGGGCGGGATGGCAGCCCCGGGGCCAGGGATGCGGGAGCCGCCGGGAAGACCCGCGCGCCGCTCGACTCAGAGGGACTCACACCTTCCCCCGACAAAG
Seq A exon
NA
Seq C2 exon
AGGCGGCCCCACTGTCGACCAAGTGCCCAAGGCATTGTGGGAGTCATGATTCCAAGATGCCCGCGACGGAAAATGGAACTTGTCAGCTCCTTGTCATGGGAGCATTGTGGGCGCCACAACTCATTCAGCTGCAGTGAAAAGACTGTTGCATGTCGCTGTGCAGCCTCTTATCGCCGAGGTCTGGCTTCCGCTGCTGCTGCGCGGCCCCTCCCCCGCCCGCCCAGCCCCACCAGGAAGCCCAGGGCGGACTCGTCGAGCTCCTAATGCACGCGGCGGCGAGAAAAACGCTCTTCAACTTTCCGCCGGCGCCCTCCCGCGCTTCCCCGGGCCACAGGGTCGCCTGTCAACCGGACAGAGCCCGCAAGAGCGGGTCATGGGCGGTCGCCCAGCGGCGCCGAGAGCAGGAGGAAGCCGGAGCCCGCGCGGGCGCCGTGGATCCCCTCGGCCTCCCGTTGGTATCTTCCATCTCATGCGTTCAGCATTGTAACCTCGCGGCGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229619-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCTTCCCCCGACAAAG
R:
CAAGTTCCATTTTCCGTCGCG
Band lengths:
102-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains