HsaINT1022625 @ hg38
Intron Retention
Gene
ENSG00000229619 | MBNL1-AS1
Description
MBNL1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44584]
Coordinates
chr3:152262616-152269555:-
Coord C1 exon
chr3:152269428-152269555
Coord A exon
chr3:152269073-152269427
Coord C2 exon
chr3:152262616-152269072
Length
355 bp
Sequences
Splice sites
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
3' ss Seq
CTCTCACATTTTTTTTTCAGAGG
3' ss Score
9.2
Exon sequences
Seq C1 exon
ATTTGGCCCAGATGAAAACCGGGCGGGATGGCAGCCCCGGGGCCAGGGATGCGGGAGCCGCCGGGAAGACCCGCGCGCCGCTCGACTCAGAGGGACTCACACCTTCCCCCGACAAAGGTCATTAAGTT
Seq A exon
GTGAGTACACTTGCACGCACCTGTTTCTCTTCTCGCCCCCCTGTTTCTCCCTGGGTCCCGCTGGGCTGCCAAGCCGTGCGCGGGCTGTGCCGTGACAGCGTCCGCAGAGCCCGCGGCAGGGAAGGGCGCAGGAGCGGCTGCGGCTCACCCTCCCGCCTTCCCCCGGGCAGGAGGTGCTGAGGGACGCGAAACCAACTACCGCGAGCGGCCCGCCCCTGCCCGGGAGAACCGCGGCCGGCGAGCACCTCCTCGCACTTCCTCCTTCAGCCACGGGCAGACCCGCCGGAGTCCGAACAATGAAGCGGCGCGGGGAAACTGTGAAAATGGAAACTTACCTCTCACATTTTTTTTTCAG
Seq C2 exon
AGGCGGCCCCACTGTCGACCAAGTGCCCAAGGCATTGTGGGAGTCATGATTCCAAGATGCCCGCGACGGAAAATGGAACTTGTCAGCTCCTTGTCATGGGAGCATTGTGGGCGCCACAACTCATTCAGCTGCAGTGAAAAGACTGTTGCATGTCGCTGTGCAGCCTCTTATCGCCGAGGTCTGGCTTCCGCTGCTGCTGCGCGGCCCCTCCCCCGCCCGCCCAGCCCCACCAGGAAGCCCAGGGCGGACTCGTCGAGCTCCTAATGCACGCGGCGGCGAGAAAAACGCTCTTCAACTTTCCGCCGGCGCCCTCCCGCGCTTCCCCGGGCCACAGGGTCGCCTGTCAACCGGACAGAGCCCGCAAGAGCGGGTCATGGGCGGTCGCCCAGCGGCGCCGAGAGCAGGAGGAAGCCGGAGCCCGCGCGGGCGCCGTGGATCCCCTCGGCCTCCCGTTGGTATCTTCCATCTCATGCGTTCAGCATTGTAACCTCGCGGCGGGCGTGCAGACCGGACGCCCTCCCGCTTCTTCTACCGACTGCTAGGCACACCAGTGGGTTCATTTTGAAAGAGGCCCTTGCACCGGGCTTTGCAAGGAAGCCGGCAAGGTTAGATTGAAGGTTAGAAGCCAATTAGACTAGAATCCTGCGATCTGGTGAGACTGCCGCCTTAAAATGCACCAAACAGTTTTTGAACCTGGAGGGCTAACAGGCGGGAAAAACATCTGCAAGACTGCCACCGTGTATTTTTCTCAAGTAACAGGCTATCCACAGTTTTGGAATTCCTTAGTGAAACTGTCACACAGGCACAAACACATGTCAGCTTTCCTTCTAGTTTGTAAATAATATTTGTAATTTACAGGCCACTGTATTCCCAACTTTGCACCATGTGATTTAGAGAAAGCAAAGCTCCCTCTTTAAAAATAATATGTTACTTCTGAAATACCGGGATATTCCACGGCAAGTAAGCCATATTGTCGCCAGAGCAAATAAACCGCAGCCCCATATCATAATTCACTGGGTGCTATAAGATGTAACTTGGCTTTGCTTTGAATGGAAAGAATCCTGAACGTCTGTGATGTGATGAAGTTTTGGAGACTGGGGGCAGGATTTCCTTTGAATGTAAGGAATTCGGATAACTTGTTCAAGGATGATTCTAGTGAAAAACGTTTGTCCCATGTTTGTTGGGACAAAAATGCTGGATATGGTACAACATTCTTCCTGCAGGTTCGGTTTTGTTGAAGAGAGTGAGGCCAGCTCGAGGTGAAGGAAAAACATCAGAAAGGTGCTAAAGTGCAGAAATATCTTCCAGAGGCACTAATAGCCGACTTTAGTTCTTGACCTTTAGCTAGATCCACAAAGCACTGAGTTAAAATTGTACACTGATCCCTTCCAGAACAAATTAATTAATTAAATGGTGCCTCTTCCCAGCGTTAATCGTTTAAAAGGACTCAAGTACCCACACAGTTTAAGCAAACTAAAAGAACACTGACACTTTCTCAGAGAACAGGGATGGGAACTTTCTATCTGCCCATTAGTATCTACCCCAAGCTACGAAGACTTCCATTCCTCTTATTAAGCATTCAGCAACTACATTTAGTGCCTACTATGCCAGTGATGCAAGAATGGATAAGACAGTCCCTACACTCAAGGATAACGCCTCTAGTAGGTGAGAGACAAACCGATTAATTCTGCATAAGGGATAAGTGCTGTATGTGGGAAGCAATCCAATGAGGGCTCTGAGGATGGCAAAGGAAGGGTTCCTGGAGGATTTACATTTAACTGGTGCCTTGAAAGGTGTGTAGAAGTTGGCAAGATCAAAAGGGAGTAGAGTCCAGGTGGAGAAGAGAAAAGAGCAGGGCAGGCTGGATGGCATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCATGGAGGGAGGATTGAGGCCAGGAGTTTGAGACCAGCCTGGGTGACATTAAAAGACCCTGTCTCAAAGAAAACGAAAGGAGCAGGGTATATACAAGGGGTCTGCCAGCCTTCTCAGCCTTTCTGTGAGAAGCGAGGGTAGGGTAGTACAGGAGAGTGGCAGGAGATGACACTAAAAGTAGGTCTGTGTTGATCTAACGAGTCTCAACTTTACTGCCAAAACTAATGAACTAGGAAAGTTTAGGCAGCAAGGGCCAGAGATGGAGTCTGGACTTGTATTGCAGAAAGTTCCTGTGACGGCAGCTTGGAGGGTGAATGAGAGTGTGGGATGGAGGGGTGAATGGGTGTGGACAGACTGGAAAAATGACTCATGCAGGGAATGAGGAAGGGAGGAGCCTTGGGAGACTCTCAAATCCCTGGCTTAGCCTACTGAATTGCTTGCTACTTGCCTTTTTATGTCTTCATTTTGCCTCCCATTGTCTGTGATATTAAAGGCCTAACTTCTTAGTAGAGCAAACTTTGCATCTGCTAGCAGGTTGGTGCCCTAGCTAGCTTCCATGCCCCTCTGCTTAGAATGCCTGCGAACCACTAAGGACTAATCCTAGTGGTAGAAATTTATTTTCAATTGTTCTCAAACCCTTGTAGAATTCCAAGTTAGAACTGTAGTGTTCTTTTTTCATGTGGGTTAGAAAATTTGCTGTTTGGAGCAACATGGTGAAACACAGGACTTTTGAACCTGCTTATGGTGCAAAAGGGGAAATTATATTTCTACTTCAACACTGGAGGAGGGGGGACTTCTGGGAGCAAAAGAGAAATGGAAACTGAGATGAGACATGTTTTTTACTCCATGACAGAATACAAAGAAATACAAGGATGATCCTTTAATGTTAGAAACAGTAGAATAACCATCCTGGTAAATAAAAAAGGAGAAAAAATGTTATTTTACATTAGATACAGAAAAACAGAATGGCTAAGAAAACTCACAAAGCAATGGTCAATCTATAACTCGAGTCCAAATAAATTGTGATATAACACTAAATTACCACTGATTTGGCCTAATTGACTATCACTGGATAACATTATAACATGAATGATAATATTTAAAATTTTAAAGCACTGTAACAAACACCAGATCATGTTAAAACTATTCAATCATGTTGTCAGCTTTCAACTGCCAGTAGCATCCTAACCACATTTCAAACTATGGAAATTACTAAAAAATCATTATTGTAATAAAAAGTTAATAGTTCCTCATTTAGAATACCATTGATATTCCCTCAGTGCCAGGAGAACATTATGGTTTCTCCTATTTCTGTGAAGTGTATAGTCTACAGGTTCATAAGTGAGTATATCCATGAGTATAAAAAGAAGGTCATTTATGGGTGGAGAGGGAAATTATAGAAAACAATTTCAGATGAAATAAACTACATTTTCAGATAAAGGAAAGAGTGTTCACTGCAGGTTCCTGAAATATTTCAGTCCATTCAAGTTTTAATTATACCAATGAATCTCAATAAAAATACAGTTAAGGAATATGGTTTTTATAGATAATGTCAGCTCCTTGTTTACCAATAATAAAGATAAAGATAATGGCAGCATTTATCTTTTTCAGTCCAATGGGGATATTTAAGGTACCTATGTAAGTGTGTGAGTGCCTGTGTGAATTGTGACTTACTTCTTCTGCATACCACATTCATAGCTCAATAAGCTCTCACTGCCTCTGCAATATAACTTGTCTTTCCTGACACACACACACACACACACACACACACACACACACTCTCACACAAACAAATCACCTAAATAAAAATATCTCAAGGAGGTATACTCTTTTAAAATGCTATTTTTATTATACCAGGATAAAAATAATTGATTGAAAGATGGTGTCAAAACCAGAACCTAGTCTCATGTCCTGTGCTTCCTAATCAATATTTAAATATAGATGGTCAAGAGAAGATGACTCTAAAAGGCAATCAAAAGTTGCAAACATTCTTGTATGGAGAATCAAGTTTAAGTAGATGCATTAAATTTATCACATTAAACTTCACAACAGGGTTGAGGAGAGAGGTGAGACCTTCTTTTGTAGAATTCAAACTTGTTCAGATATTTGAATACATATACTTGAGAGAAAGAATTACATGAATTTAGTTTATCTTCAAGGACCTTTATATATTTCATACACAACACAATTTCTTTGTGCTCATTATTTAAAAATAAAAATATGTATTCTAATAGATACTATGTATATATTTGATATATAATACAATATATTGTATGTATAACACGTATATTGCACATGAATGTGAAAATATATAAAATCAATATATTTGCTACTAAATGTTTATGAAATTTAAAGCAGTTAAATATTATGCATTTCTCAATTAAGTTATTTTACCTAAAAGTTGAATCTGTATCTTCAATATCATTATTTTAGGATCTGGCAATAGAGAGACAGTAAGCAAATACATTTTGAAATTAAAAGTTCAAAATCATAGAATTTTAGCATTGAATGGAATGTTAGAGAGCATCTGGCCTTGTTCCCTTGTTAAACCAGAGGAGTGCATTATTTAAGGAACTTGGCACCATGGCAGAGCAGAACTGACATCAGTGTCTTCTGACTCTCTCAGGCCATTCATTTTCATTGTCTTTTTTTTTTTCTTAAAGACAATAAGGACAAGAAGAAGCTCTAAAATAGGCCTAACAGTTTCCCCAGTTTAATGTAAGGAGGTGCTACATGAGATTTCCAAGAGTATAGTTCTTCCTTCCTCTGTTTCTTCCTTCTTTCATTTTTTCCTTCTTTTATTCTTTCTATTTTTTCATCCTTTCTTTCTTCTTTCCATACAGAAAACACTTTTCACACAATGACTCTATTCATTTCACAAACATTTATTGAGCATCAGCCATGGCTAACTCCTATTCTAGGTACTGTGGTTACAGAAATGAACAGCACAGATAAATCACTTCCCTCAAAGGGGTTGCATTCTACTAGGGGGAGACAAGCAACAAAAAATAAGTCAAAAATAAAAAATAAAAGATAAACATATGAGGTAATTTCAGATGGAGATAAGCGCTATGAAATAAAGCAGGTTGGGGGGATTTGGGAGAGAAGGTTGTGTGAAACAGGATGGAGGACTGAGCTGGTCATATGCAGGCAAGGTTCTCGGTGAAGTGAGAAATAACTGGGGAAAGAGCATTCAAAGCAGTGGGGACTGCATGGCAAGAGCCCTAAGGCCAGGGTTCATGGTAGGGCTAGAGAGCCAATGGTGAACAAAAACTACCTAACCTCAAGGAGCTTACAGTCAAGGAAGAGGGAAAAAATGAATCTCCATCAAATTAATCACACTCAAAATGCAAAGCTACAACCATGATACTTTTCCTCACTGGGAACCATTGAAGTGTTTGATTATGTTAGAGGCAGGGGTGGGGTGGGGTGATGGAACATTATCTAAATTTTGTTTTCACAAAGATAACTAGATAACTCTTGACTGCTGTGTAAAGGCTGATAGTCTAATCTCAGAAGAGACTGCATGAAGTCCACCACTGCTGAGAATGACAGCAAACCAAAAGTGGGCTCTGTCTAGGAGGCAACAGACAGCAAATGGCTGGGGACCCAGCAGCGGAATGTGATTTGGTTGAAGACCCTCGGCAATGGGGTACAACAAACCTTAGAACCTTACATCTCAGAGTTGAAGAGAAGCCATAAGACTCATGATCCTCGAGATAACATAACTTGAGGGAAGGGAGATGTGGTATGCCTGTTTGTGTGTGACTTATTTATTATTTGGAGTCAACACAATGTAGAAAATTCGAAATTAGTGAAGGTAGAATATTTTGATATCAGCAGTGTTTCCAGTTCCCAGAGATAGGGAACTGTTTGTATTACAGTTTATTTCCTTCTAGGCTTTTCCAATGCATTTTTAAAAGCATAGTTAATATTGTACTATATATGCAATTTCTTTTCCAAATTTAATCTTTTAAGACAATCTTATAAAACAAAGGCCACCTCCCCCATGTCATTTATATATAATCTTCATTTTTCATGAGGTAATGGAAGCTGGAGAGTTGGCCCTTGACCAAAGCCTTGCAGCTAACAAGAGGACAAGCCTCCTGCCCCACAGTGTTTCACAGCCAGTACCCCAAGCTCCTGAATTCATCTGTCTAATGTGTAATATATTTATAAACACTCTACCTGGGATGTATGCGTACCTTCTACTATGGACTGTTGTTAAAGACAAGTAAATATGCAATCGTGGTCTTTCAATAAACTAAACGGATATAAAAATAAATATAGAATACAGCCAGAAGATCAAAATTGACATATTATCTATTTATGCTTATAATATGTAATTACATGTAATATTGTAAAACACTTTCTACCATTTCATAAAATTCTGTGTTGTTATTTAGCCCAGAATTCCCTTGCAATCTTTTAAAAATAGTATCTAATAGGGCTTTTAATATAAATGTCGTAGTGAAACTGTTTTATGTACTGTAACCCAAACATTTCTACGTAGTAACACTGTTCCATATAGAAAACAAATATGAAAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229619:ENST00000608395:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCACACCTTCCCCCGA
R:
GCCGGCGGAAAGTTGAAGAG
Band lengths:
342-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains