HsaALTD1053230-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000152253 | SPC25
Description
SPC25, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:24031]
Coordinates
chr2:168890529-168913300:-
Coord C1 exon
chr2:168913200-168913300
Coord A exon
chr2:168913196-168913199
Coord C2 exon
chr2:168890529-168890686
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
AATATCTGTATTTGTTCCAGAAA
3' ss Score
7.88
Exon sequences
Seq C1 exon
CAATCCGGTCCATGCTGTTCATCAGACAAAGCCTGAATCCTGGAAAAAGCCAACTCTTTGAACAGGAATTAGAGTGTGATCGGCTCAGTTGACGTACAGGG
Seq A exon
GTAG
Seq C2 exon
AAACCTTTATTTGAAGCCGATAAATGACTTGTCGTGGGCGAGCCCTTCGGGTGCTATTAATACTTTCGGGTCACAGCGGAGACTCTGGCTGTTGTTCAGAAAAGAACTACGAATCCCAGAATGCCCTGTTCCCCCATTTTCCCCTCGAGAATCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152253-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGATCGGCTCAGTTGACG
R:
CCGCTGTGACCCGAAAGTATT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains