HsaEX6016490 @ hg38
Exon Skipping
Gene
ENSG00000152254 | G6PC2
Description
glucose-6-phosphatase catalytic subunit 2 [Source:HGNC Symbol;Acc:HGNC:28906]
Coordinates
chr2:168901240-168904616:+
Coord C1 exon
chr2:168901240-168901549
Coord A exon
chr2:168902445-168902554
Coord C2 exon
chr2:168904505-168904616
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTATAATTCTTTAAATACAGGAT
3' ss Score
5.89
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCGACATGCCACAAAGGCACAGTATAAAAACGGTGGGAATCAGAGCACTTCAGCTCCAATTGCTCTATGTTTAGAATTGCCTCTTTTTCAAGATGGATTTCCTTCACAGGAATGGAGTGCTCATAATTCAGCATTTGCAGAAGGACTACCGAGCTTACTACACTTTTCTAAATTTTATGTCCAATGTTGGAGACCCCAGGAATATCTTTTTCATTTATTTTCCACTTTGTTTTCAATTTAATCAGACAGTTGGAACCAAGATGATATGGGTAGCAGTCATTGGGGATTGGTTAAATCTTATATTTAAATG
Seq A exon
GATATTATTTGGTCATCGACCTTACTGGTGGGTCCAAGAAACTCAGATTTACCCAAATCACTCAAGTCCATGCCTTGAACAGTTCCCTACTACATGTGAAACAGGTCCAG
Seq C2 exon
GAAGTCCATCTGGCCATGCAATGGGCGCATCCTGTGTCTGGTATGTCATGGTAACCGCTGCCCTGAGCCACACTGTCTGTGGGATGGATAAGTTCTCTATCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152254-'0-4,'0-1,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(13.6=27.4)
A:
PF0156916=PAP2=FE(25.2=100)
C2:
PF0156916=PAP2=PD(24.7=63.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACAGGAATGGAGTGCT
R:
CATACCAGACACAGGATGCGC
Band lengths:
255-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains