MmuEX6101849 @ mm9
Exon Skipping
Gene
ENSMUSG00000005232 | G6pc2
Description
glucose-6-phosphatase, catalytic, 2 [Source:MGI Symbol;Acc:MGI:1277193]
Coordinates
chr2:69058028-69061100:+
Coord C1 exon
chr2:69058028-69058307
Coord A exon
chr2:69058840-69058949
Coord C2 exon
chr2:69060989-69061100
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCATATTTGTTTACTCACAGGAT
3' ss Score
8.61
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TAGAGACAGTGGGACACAGGGCCCTGCAGTTCCACCTGCTTCATGCTTAGACCTGCATCAAGATGGATTTCCTTCATAGGAGTGGAGTGCTTATTATTCATCATCTGCAGGAGGACTACCGGACTTACTATGGTTTTCTAAATTTTATGTCCAATGTTGGAGACCCCCGAAATATCTTTTCTATTTACTTCCCACTTTGGTTTCAGTTGAATCAGAATGTTGGAACCAAGATGATCTGGGTAGCGGTCATAGGGGACTGGTTCAATCTCATATTTAAATG
Seq A exon
GATATTGTTTGGCCATCGTCCTTACTGGTGGATACAAGAAACTGAGATTTATCCAAATCATTCAAGCCCATGTCTTGAGCAGTTTCCTACTACGTGTGAAACAGGCCCAG
Seq C2 exon
GAAGTCCATCTGGCCACGCAATGGGCTCATCGTGCGTCTGGTATGTCATGGTAACAGCTGCCCTAAGCTACACCATCAGCCGGATGGAGGAGTCCTCTGTCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005232-'1-4,'1-3,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(19.5=42.5)
A:
PF0156916=PAP2=FE(23.3=100)
C2:
PF0156916=PAP2=FE(23.3=100),PF134911=DUF4117=PU(26.7=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTGCAGGAGGACTACCG
R:
GATGGTGTAGCTTAGGGCAGC
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: