RnoEX6017235 @ rn6
Exon Skipping
Gene
ENSRNOG00000050620 | AABR07052465.1
Description
NA
Coordinates
chr3:55461446-55464721:+
Coord C1 exon
chr3:55461446-55461633
Coord A exon
chr3:55462366-55462475
Coord C2 exon
chr3:55464610-55464721
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCATGTTTGTTTGTTCACAGGAT
3' ss Score
9.6
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCATCCAGCATCTGGAGAAAGATTACCGGGCTTACTATGGTTTTCTAAATTTTATATCCAATGTTGGAGACCCCCGAAATATCTTTTCTATTTACTTCCCACTTTGGTTTCAGTTGAATCAGACTGTTGGAACCAAGATGATATGGGTAGCGGTTGTAGGGGACTGGTTCAATCTTGTATTTAAATG
Seq A exon
GATATTGTCTGGCCATTGTCCTTACTGGTGGATCCAAGAAACTGAGATTTACCCAAATCATTCAAGTCCATGTCTTGAGCAGATTCCTACTCCATGTGAAACAGGTCCAG
Seq C2 exon
GAAGTCCATGTGGCCTCGCAATGGGCTCATCATGTGTCTGGTATGTCATGGTAACAGCCGCCTTAAACTACACTGTCAGCTGGATGGACGAGTCCTCTAACACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050620-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAAAGATTACCGGGCT
R:
TAAGGCGGCTGTTACCATGAC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]