DreEX6067755 @ danRer10
Exon Skipping
Gene
ENSDARG00000013721 | g6pca.2
Description
glucose-6-phosphatase a, catalytic subunit, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050309-17]
Coordinates
chr12:6007978-6010871:+
Coord C1 exon
chr12:6007978-6008253
Coord A exon
chr12:6008338-6008447
Coord C2 exon
chr12:6010788-6010871
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGCTCACTCGTCTATTTAAGGAT
3' ss Score
8.79
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCGGTGGATGACTGTCACACTAGACGAGCTCTGAGAGAATCTAAACATGGATGCAGTGATGGATACAATGCACGGGTTTGGTGTGAGCAGCACACAGTACCTTCAGACTCATTACAAAGATGCCCAAGGATGGTTTCTTTTCGTCTCCTTCGCCGCAGATCTGAGGAACACCTTCTTCATCTTCTTTCCCATTTGGTTCCATCTGAAAGAGTCAGTGGGCATCAAGCTTATCTGGGTGGCAGTGATAGGAGATTGGCTTAATTTAGTCTTCAAATG
Seq A exon
GATCCTTTTTGGAGAACGTCCATACTGGTGGGTCCATGAGACGTCCTACTACATGAACAGCTCAGCGCCTCATATTGAACAGTATCCCATGACCTGTGAGACTGGCCCAG
Seq C2 exon
GTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013721-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
83%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(13.5=27.4)
A:
PF0156916=PAP2=FE(25.2=100)
C2:
PF0156916=PAP2=FE(24.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGCACGGGTTTGGTGT
R:
CAGCACCCATAGCATGACCTG
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]