MmuEX6089907 @ mm10
Exon Skipping
Gene
ENSMUSG00000078650 | G6pc
Description
glucose-6-phosphatase, catalytic [Source:MGI Symbol;Acc:MGI:95607]
Coordinates
chr11:101368008-101372807:+
Coord C1 exon
chr11:101368008-101368108
Coord A exon
chr11:101370706-101370815
Coord C2 exon
chr11:101372702-101372807
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTGGCTCTGCTCTCCACAGGAT
3' ss Score
10.62
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCAACCTCGTCTTCAAGTGGTAAGAACCATCCCGAGGGGTGATGGGTAGAGAAATGGCTGTCCTCCAGCAGGGGTACCCCATACTGTTCACCAGGCTACAG
Seq A exon
GATTCTGTTTGGACAACGCCCGTATTGGTGGGTCCTGGACACCGACTACTACAGCAACAGCTCCGTGCCTATAATAAAGCAGTTCCCTGTCACCTGTGAGACCGGACCAG
Seq C2 exon
GAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCTATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078650-'1-3,'1-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0156916=PAP2=FE(25.5=100)
C2:
PF0156916=PAP2=FE(24.1=100)
Main Skipping Isoform:
ENSMUST00000019469fB10308
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCTCGTCTTCAAGTGGT
R:
CGGAATCCATACGTTGGCTTT
Band lengths:
207-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types