BtaEX6088921 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010184 | G6PC
Description
Bos taurus glucose-6-phosphatase, catalytic subunit (G6PC), mRNA. [Source:RefSeq mRNA;Acc:NM_001076124]
Coordinates
chr19:43590846-43596531:+
Coord C1 exon
chr19:43590846-43591141
Coord A exon
chr19:43593967-43594076
Coord C2 exon
chr19:43596426-43596531
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCGTTCTGCTTTTTCACAGGAT
3' ss Score
9.95
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGCAGAGCAATCACCACCCAGTCTGAAATAACTGCAAGGGCACAGCCGAAGGCTTCCTGAGTGAGGATGGAGAAGGGAATGAACGTTCTACATGACTTTGGGATCCAGTCAACACACTACCTCCAGGTGAATTACCAGAACTCCCAGGATTGGTTCATCTTGGTGTCTGTGATTGCAGATCTCAGGAATGCCTTTTATGTCCTCTTCCCCATTTGGTTCCATCTTCGAGAAGCTGTGGGCATCAAACTCCTCTGGGTAGCTGTGATTGGAGATTGGCTCAACCTCGTCTTTAAGTG
Seq A exon
GATTCTCTTTGGACAGCGCCCATACTGGTGGGTTTTGGATACCGACTACTACAGCAACACCTCGGCACCGCTGATAAAGCAGTTCCCGGTCACCTGTGAGACCGGCCCAG
Seq C2 exon
GGAGTCCCTCTGGCCACGCCATGGGTACAGCAGGTGTATACTATGTGATGGTCACATCCACCCTCTCTATCTTTCGTGGAAAGAAAAAGCCAACCTACAGATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010184-'2-1,'2-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(13.7=26.0)
A:
PF0156916=PAP2=FE(25.3=100)
C2:
PF0156916=PAP2=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAACTCCCAGGATTGGT
R:
GGTTGGCTTTTTCTTTCCACGA
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]