RnoEX0037303 @ rn6
Exon Skipping
Gene
ENSRNOG00000051171 | G6pc
Description
glucose-6-phosphatase, catalytic subunit [Source:RGD Symbol;Acc:2644]
Coordinates
chr10:89285855-89290754:+
Coord C1 exon
chr10:89285855-89286304
Coord A exon
chr10:89288262-89288371
Coord C2 exon
chr10:89290649-89290754
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTGACTCTGCTCTCTGCAGGAT
3' ss Score
9.31
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTTTGCATCAACCTACTGATGATGCACCTTTGATCAATAGATTTTAGACAAAAGTGTTTTTTTGAGTCCAAAGATCAGGGCTAGGTTGACCTACAGACTGAATCCAGGGCATATAAAATGGGCAAGGCACAGACTGATAGCAGAGGAACCAGGGCCAGCCAGGCTGGACTCACTGCACGGGCTCTGCTGGCAGCTTCCTGAGGTACCAAGGAGGAAGGATGGAGGAAAGAATGAACGTGCTCCACGACTTTGGGATCCAGTCGACTCGCTACCTCCAAGTGAATTACGAAGACTCCCAGGACTGGTTTGTCTTGGTGTCTGTGATCGCTGACCTCAGGAACGCCTTCTATGTCCTCTTTCCCATCTGGTTCCACATTCAAGAGACTGTGGGCATCAATCTCCTCTGGGTGGCAGTGGTTGGAGACTGGTTCAACCTCGTCTTTAAGTG
Seq A exon
GATTCTTTTTGGACAGCGCCCGTATTGGTGGGTCCTGGACACTGACTATTACAGCAACAGCTCCGTGCCTCTGATAAAACAGTTCCCCGTCACCTGTGAGACTGGACCAG
Seq C2 exon
GGAGTCCCTCGGGCCATGCCATGGGCACAGCAGGTGTATACTACGTTATGGTTACTTCTACTCTCGCTATCTTTCGTGGAAAGAAAAAGTCAACGTATGGATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051171_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(14.5=27.3)
A:
PF0156916=PAP2=FE(25.5=100)
C2:
PF0156916=PAP2=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGACTTTGGGATCCAGT
R:
ACGTAGTATACACCTGCTGTGC
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]