HsaEX6022868 @ hg19
Exon Skipping
Gene
ENSG00000131482 | G6PC
Description
glucose-6-phosphatase, catalytic subunit [Source:HGNC Symbol;Acc:4056]
Coordinates
chr17:41052815-41059645:+
Coord C1 exon
chr17:41052815-41053123
Coord A exon
chr17:41055948-41056057
Coord C2 exon
chr17:41059540-41059645
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTGTTTTTCCATAGGAT
3' ss Score
12.89
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TAGCAGAGCAATCACCACCAAGCCTGGAATAACTGCAAGGGCTCTGCTGACATCTTCCTGAGGTGCCAAGGAAATGAGGATGGAGGAAGGAATGAATGTTCTCCATGACTTTGGGATCCAGTCAACACATTACCTCCAGGTGAATTACCAAGACTCCCAGGACTGGTTCATCTTGGTGTCCGTGATCGCAGACCTCAGGAATGCCTTCTACGTCCTCTTCCCCATCTGGTTCCATCTTCAGGAAGCTGTGGGCATTAAACTCCTTTGGGTAGCTGTGATTGGAGACTGGCTCAACCTCGTCTTTAAGTG
Seq A exon
GATTCTCTTTGGACAGCGTCCATACTGGTGGGTTTTGGATACTGACTACTACAGCAACACTTCCGTGCCCCTGATAAAGCAGTTCCCTGTAACCTGTGAGACTGGACCAG
Seq C2 exon
GGAGCCCCTCTGGCCATGCCATGGGCACAGCAGGTGTATACTACGTGATGGTCACATCTACTCTTTCCATCTTTCAGGGAAAGATAAAGCCGACCTACAGATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131482-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(13.5=26.0)
A:
PF0156916=PAP2=FE(25.0=100)
C2:
PF0156916=PAP2=PD(36.6=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCATCTTGGTGTCCGTG
R:
AGGTCGGCTTTATCTTTCCCTG
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)