MmuEX6089907 @ mm9
Exon Skipping
Gene
ENSMUSG00000078650 | G6pc
Description
glucose-6-phosphatase, catalytic [Source:MGI Symbol;Acc:MGI:95607]
Coordinates
chr11:101228875-101234121:+
Coord C1 exon
chr11:101228875-101229340
Coord A exon
chr11:101232020-101232129
Coord C2 exon
chr11:101234016-101234121
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTGGCTCTGCTCTCCACAGGAT
3' ss Score
10.62
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AATCACCCTGAACATGTTTGCATCAACCTACTGATGATGCACCTTTGATCAATAGATTTTAGACAAAAGTGGTTTTTTGAGTCCAAAGATCAGGGCTGGATTGACCTACAGACTGAATCCAGGGCATATAAAACAGGGGCAAGGCACAGACTGATAGCAGAGGGATCAAGGCCAACCGGGCTGGACTCACTGCACGGGCTCTGCTGGCAGCTTCCTGAGGTACCAAGGGAGGAAGGATGGAGGAAGGAATGAACATTCTCCATGACTTTGGGATCCAGTCGACTCGCTATCTCCAAGTGAATTACCAAGACTCCCAGGACTGGTTCATCCTTGTGTCTGTGATTGCTGACCTGAGGAACGCCTTCTATGTCCTCTTTCCCATCTGGTTCCATCTTAAAGAGACTGTGGGCATCAATCTCCTCTGGGTGGCAGTGGTCGGAGACTGGTTCAACCTCGTCTTCAAGTG
Seq A exon
GATTCTGTTTGGACAACGCCCGTATTGGTGGGTCCTGGACACCGACTACTACAGCAACAGCTCCGTGCCTATAATAAAGCAGTTCCCTGTCACCTGTGAGACCGGACCAG
Seq C2 exon
GAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCTATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078650-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(14.5=27.3)
A:
PF0156916=PAP2=FE(25.5=100)
C2:
PF0156916=PAP2=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCCAGTCGACTCGCTAT
R:
CATAGTATACACCTGCTGCGCC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: