BtaEX6009295 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004241 | G6PC2
Description
Bos taurus glucose-6-phosphatase, catalytic, 2 (G6PC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192046]
Coordinates
chr2:27278160-27281293:-
Coord C1 exon
chr2:27281076-27281293
Coord A exon
chr2:27280395-27280504
Coord C2 exon
chr2:27278160-27278271
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTATATTTCTTTAAATACAGGAT
3' ss Score
6.81
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATGGATTTCCTTCATAGGAATGGAGTGCTCGTTATTCAGCATTTGCAGAAGGACTACCGAGCTTACTACAATTTTCTAAATTTTATGTCTAATGTTGGAGATCCCCGGAATATCTTTTCTATTTATTTTCCACTTTGGTTTCAACTTAATCAGACAGTTGGAACTAAGATGATATGGGTAGCAGTCATTGGGGATTGGTTCAATCTTATTTTTAAATG
Seq A exon
GATATTATTTGGTCATCGGCCTTACTGGTGGGTCCAAGAAACTCAGATTTACCCAAATCACTCAAGTCCATGCCTTGAACAGTTCCCCACTACATGCGAAACAGGTCCAG
Seq C2 exon
GAAGTCCATCTGGCCATGCGATGGGTTCATCATGTGTCTGGTATGTCATGGTGACAGCGGCCCTGAGCCACACCGTCAGTCAGATGGATAAGTCTTTTATCACTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004241-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(16.8=35.6)
A:
PF0156916=PAP2=FE(23.9=100)
C2:
PF0156916=PAP2=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGGACTACCGAGCTT
R:
CTGACTGACGGTGTGGCTCAG
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]