GgaEX6042469 @ galGal4
Exon Skipping
Gene
ENSGALG00000010899 | G6PC2
Description
glucose-6-phosphatase, catalytic, 2 [Source:HGNC Symbol;Acc:HGNC:28906]
Coordinates
chr7:18418869-18420438:-
Coord C1 exon
chr7:18420212-18420438
Coord A exon
chr7:18419785-18419894
Coord C2 exon
chr7:18418869-18418980
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTGTTTTCTGTTAGGAT
3' ss Score
9.1
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCAATTAAGATGGATCTCCTTCATAGCAATGGAGTGCTTATCATTCAGCATTTACAGAGAGACTACAGGGCTTACCAGGATTTCCTTAATTTTATGTCACATGTTGGAGATCCTCGGAATATATTCTCATTTTATTTTCCTCTTTGGTTTCAGCTCAACCAAGTGGTTGGTACTAAAATGATATGGGTGGCAGTCATTGGTGATTGGTTCAACCTCATATTTAAATG
Seq A exon
GATTTTATTTGGCCATCGTCCCTACTGGTGGGTGCATGAAACAATGATTTATCCCAATCAGTCAAGCCCATGCCTCGAACAGTTTCCCATAACATGTGAAACTGGACCAG
Seq C2 exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(21.3=46.1)
A:
PF0156916=PAP2=FE(22.6=100)
C2:
PF0156916=PAP2=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTCATAGCAATGGAGTGC
R:
GGAAGATCCCATGGCATGTCC
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]