GgaEX6042469 @ galGal3
Exon Skipping
Gene
ENSGALG00000010899 | G6PC2
Description
NA
Coordinates
chr7:20386997-20388413:-
Coord C1 exon
chr7:20388340-20388413
Coord A exon
chr7:20387913-20388022
Coord C2 exon
chr7:20386997-20387108
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTGTTTTCTGTTAGGAT
3' ss Score
9.1
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCAACCAAGTGGTTGGTACTAAAATGATATGGGTGGCAGTCATTGGTGATTGGTTCAACCTCATATTTAAATG
Seq A exon
GATTTTATTTGGCCATCGTCCCTACTGGTGGGTGCATGAAACAATGATTTATCCCAATCAGTCAAGCCCATGCCTCGAACAGTTTCCCATAACATGTGAAACTGGACCAG
Seq C2 exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(13.4=83.3)
A:
PF0156916=PAP2=FE(24.8=100)
C2:
PF0156916=PAP2=FE(24.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTGGTACTAAAATGATATGGG
R:
CTGTGAAGGGTAACTGCTGAT
Band lengths:
178-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]