HsaEX6016489 @ hg38
Exon Skipping
Gene
ENSG00000152254 | G6PC2
Description
glucose-6-phosphatase catalytic subunit 2 [Source:HGNC Symbol;Acc:HGNC:28906]
Coordinates
chr2:168902949-168906779:+
Coord C1 exon
chr2:168902949-168902992
Coord A exon
chr2:168904505-168904544
Coord C2 exon
chr2:168906664-168906779
Length
40 bp
Sequences
Splice sites
3' ss Seq
CGGACACTTTGTTGTTGCAGGAA
3' ss Score
8
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATCTCACGAATGAGGGAGGAGTAGACAAGTCTTCTGTAAGAAAG
Seq A exon
GAAGTCCATCTGGCCATGCAATGGGCGCATCCTGTGTCTG
Seq C2 exon
ACTGACCTGGTCATTTCTTTGGAGTGTTTTTTGGTTGATTCAAATCAGTGTCTGCATCTCCAGAGTATTCATAGCAACACATTTTCCTCATCAAGTTATTCTTGGAGTAATTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152254-'4-5,'4-4,5-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0156916=PAP2=PD(24.7=63.2)
C2:
PF0156916=PAP2=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGAGGGAGGAGTAGACA
R:
ACTTGATGAGGAAAATGTGTTGCT
Band lengths:
135-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains