RnoEX6017234 @ rn6
Exon Skipping
Gene
ENSRNOG00000050620 | AABR07052465.1
Description
NA
Coordinates
chr3:55462366-55466574:+
Coord C1 exon
chr3:55462366-55462475
Coord A exon
chr3:55464610-55464721
Coord C2 exon
chr3:55466553-55466574
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACAAATGACGCTCAATACAGGAA
3' ss Score
3.61
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GATATTGTCTGGCCATTGTCCTTACTGGTGGATCCAAGAAACTGAGATTTACCCAAATCATTCAAGTCCATGTCTTGAGCAGATTCCTACTCCATGTGAAACAGGTCCAG
Seq A exon
GAAGTCCATGTGGCCTCGCAATGGGCTCATCATGTGTCTGGTATGTCATGGTAACAGCCGCCTTAAACTACACTGTCAGCTGGATGGACGAGTCCTCTAACACTCTGCACAG
Seq C2 exon
GGACGCTAGTAGCCGAGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050620-'2-3,'2-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATTGTCTGGCCATTGTCCT
R:
TATTATGAACGGTGAGCCATCATGT
Band lengths:
210-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]