GgaEX6042470 @ galGal3
Exon Skipping
Gene
ENSGALG00000010899 | G6PC2
Description
NA
Coordinates
chr7:20386032-20388022:-
Coord C1 exon
chr7:20387913-20388022
Coord A exon
chr7:20386997-20387108
Coord C2 exon
chr7:20386032-20386147
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAACTTTTCGTATTTATTAGGGA
3' ss Score
7.13
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATTTTATTTGGCCATCGTCCCTACTGGTGGGTGCATGAAACAATGATTTATCCCAATCAGTCAAGCCCATGCCTCGAACAGTTTCCCATAACATGTGAAACTGGACCAG
Seq A exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
Seq C2 exon
ACTGACATGGTCATTACTCTGGACTATTTTTTGGATTATCCAGATCAGTGTGTGCATCTCAAGAGTATTCATAGCAACACATTTCCCTCATCAAGTTATTCTTGGAGTATTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.8=100)
A:
PF0156916=PAP2=FE(24.8=100)
C2:
PF0156916=PAP2=FE(26.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTATTTGGCCATCGTCCCT
R:
AGAATAACTTGATGAGGGAAATGTGT
Band lengths:
210-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]