GgaEX6042470 @ galGal4
Exon Skipping
Gene
ENSGALG00000010899 | G6PC2
Description
glucose-6-phosphatase, catalytic, 2 [Source:HGNC Symbol;Acc:HGNC:28906]
Coordinates
chr7:18417904-18419894:-
Coord C1 exon
chr7:18419785-18419894
Coord A exon
chr7:18418869-18418980
Coord C2 exon
chr7:18417904-18418019
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAACTTTTCGTATTTATTAGGGA
3' ss Score
7.13
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATTTTATTTGGCCATCGTCCCTACTGGTGGGTGCATGAAACAATGATTTATCCCAATCAGTCAAGCCCATGCCTCGAACAGTTTCCCATAACATGTGAAACTGGACCAG
Seq A exon
GGAGTCCATCTGGACATGCCATGGGATCTTCCTGCGTCTGGTATGTAATGGTAACAGCAGCACTTAGCTACACTGTGAGGTGGAAAGAGAAATCAGCAGTTACCCTTCACAG
Seq C2 exon
ACTGACATGGTCATTACTCTGGACTATTTTTTGGATTATCCAGATCAGTGTGTGCATCTCAAGAGTATTCATAGCAACACATTTCCCTCATCAAGTTATTCTTGGAGTATTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010899-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(22.6=100)
A:
PF0156916=PAP2=FE(22.6=100)
C2:
PF0156916=PAP2=FE(23.8=100)
Main Skipping Isoform:
ENSGALT00000017723fB1904
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTATTTGGCCATCGTCCCT
R:
AGAATAACTTGATGAGGGAAATGTGT
Band lengths:
210-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]