MmuEX6101848 @ mm10
Exon Skipping
Gene
ENSMUSG00000005232 | G6pc2
Description
glucose-6-phosphatase, catalytic, 2 [Source:MGI Symbol;Acc:MGI:1277193]
Coordinates
chr2:69220783-69225927:+
Coord C1 exon
chr2:69220783-69220892
Coord A exon
chr2:69222932-69223043
Coord C2 exon
chr2:69225812-69225927
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACAAATGATGCTCATTGCAGGAA
3' ss Score
5.98
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GATATTGTTTGGCCATCGTCCTTACTGGTGGATACAAGAAACTGAGATTTATCCAAATCATTCAAGCCCATGTCTTGAGCAGTTTCCTACTACGTGTGAAACAGGCCCAG
Seq A exon
GAAGTCCATCTGGCCACGCAATGGGCTCATCGTGCGTCTGGTATGTCATGGTAACAGCTGCCCTAAGCTACACCATCAGCCGGATGGAGGAGTCCTCTGTCACTCTGCACAG
Seq C2 exon
ACTGACCTGGTCCTTTCTGTGGAGTGTTTTCTGGTTGATTCAAATCAGCGTCTGCATCTCAAGAGTATTCATAGCCACACATTTCCCCCATCAGGTCATTCTTGGAGTGATTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005232-'2-8,'2-5,5-8=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(23.3=100)
A:
PF0156916=PAP2=PD(32.2=73.7)
C2:
PF0156916=PAP2=FE(24.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATTGTTTGGCCATCGTCCT
R:
CACCAATCACTCCAAGAATGACCT
Band lengths:
226-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types