HsaEX6016489 @ hg19
Exon Skipping
Gene
ENSG00000152254 | G6PC2
Description
glucose-6-phosphatase, catalytic, 2 [Source:HGNC Symbol;Acc:28906]
Coordinates
chr2:169758955-169763289:+
Coord C1 exon
chr2:169758955-169759064
Coord A exon
chr2:169761015-169761126
Coord C2 exon
chr2:169763174-169763289
Length
112 bp
Sequences
Splice sites
3' ss Seq
CGGACACTTTGTTGTTGCAGGAA
3' ss Score
8
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GATATTATTTGGTCATCGACCTTACTGGTGGGTCCAAGAAACTCAGATTTACCCAAATCACTCAAGTCCATGCCTTGAACAGTTCCCTACTACATGTGAAACAGGTCCAG
Seq A exon
GAAGTCCATCTGGCCATGCAATGGGCGCATCCTGTGTCTGGTATGTCATGGTAACCGCTGCCCTGAGCCACACTGTCTGTGGGATGGATAAGTTCTCTATCACTCTGCACAG
Seq C2 exon
ACTGACCTGGTCATTTCTTTGGAGTGTTTTTTGGTTGATTCAAATCAGTGTCTGCATCTCCAGAGTATTCATAGCAACACATTTTCCTCATCAAGTTATTCTTGGAGTAATTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152254-'1-3,'1-2,3-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.2=100)
A:
PF0156916=PAP2=PD(24.7=63.2)
C2:
PF0156916=PAP2=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACTGGTGGGTCCAAGAA
R:
ACTTGATGAGGAAAATGTGTTGCT
Band lengths:
187-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)