HsaALTD1053739-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000196670 | ZFP62
Description
ZFP62 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23241]
Coordinates
chr5:180851381-180861319:-
Coord C1 exon
chr5:180861219-180861319
Coord A exon
chr5:180861074-180861218
Coord C2 exon
chr5:180851381-180851493
Length
145 bp
Sequences
Splice sites
5' ss Seq
TGGGTGCGT
5' ss Score
5.46
3' ss Seq
TTTTCATTTTCTTGGTTTAGTGT
3' ss Score
8.74
Exon sequences
Seq C1 exon
AGGGCGCGGAAGTGCCCCAGGGCCGGCGCGGGTTCTTCCGGCCGTGCGGTCCGCGCTTTTGTCCCGCTGGCGGCCGGGTTCCCGCGGCGCCGCCACAGCCA
Seq A exon
GTACGTGAGTCCGCGGCCGCCCGCGCTCCCGCCCCCGGCCCTTGCCTGCCACGCCCTCCCCTTTTTGGCCGGGTCTTGGCTGCTCCGCGGGTCTCGGGCGGGATGTGGGAGTAAGCGTGCCCCCTCCCCGCACATGTCTCAGTGG
Seq C2 exon
TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196670-0-11,1-11,2-11,3-11-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCGCGCTTTTGTCC
R:
TTCAGGCATAGGATCCTCCACT
Band lengths:
162-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains