HsaEX1044651 @ hg38
Exon Skipping
Gene
ENSG00000196670 | ZFP62
Description
ZFP62 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23241]
Coordinates
chr5:180847615-180859006:-
Coord C1 exon
chr5:180858950-180859006
Coord A exon
chr5:180856138-180856252
Coord C2 exon
chr5:180847615-180851493
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCATTTTGATTTCACTCAAGAAG
3' ss Score
1.31
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCTTGGCGATAAAGCATGAACAAGAAGCTCGGAAGAGTGCCCAGAGGTTGTTGGTC
Seq A exon
AAGAGGATTGGATGAACTACATCAGGTGACGGGACATCATGCGCCCCAACCCAAACAGAGGGGTTTAAGCAGAGCCAGAACAGGGAGGCCCCTGGCCTTCACCTAGGTTAGAGAG
Seq C2 exon
TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196670_MULTIEX1-3/5=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTGCCCAGAGGTTGTTG
R:
GCTGATTGCTTCCCTGATGCT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains