HsaEX0000245 @ hg19
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67218674-67221670:-
Coord C1 exon
chr17:67221466-67221670
Coord A exon
chr17:67219769-67219850
Coord C2 exon
chr17:67218674-67218838
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGTATTTTTTATACCCCTAGAGA
3' ss Score
5.83
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAATGGACAATAACATTGTTTCTAGGGCTATATTTGTGCATCTTTTCGGAACACTTCAGAGCTACCCGTTTTCCTGAACAACCTCCTAAAGTCCTGGGAAGCGTGGATCAGTTTAATGACTCTGGCCTGGTAGTGGCATATACACCAGTCAGTAACATAACACAAAGGATAATGAATAAGATGGCCTTGGCTTCCTTTATGAAAG
Seq A exon
AGAAAATCAGTGATGTTAGCACTGTCCTCATAAAAGTTTCACCGCCTGACTCTATATTGGGAAGGATGAGGAGTTTTGAAAG
Seq C2 exon
GAAGAACAGTCATTGGGACACCAGATGAAGAGACCATGGATATAGAACTTCCAAAAAAATACCATGAAATGGTGGGAGTTATATTTAGTGATACTTTCTCATATCGCCTGAAGTTTAATTGGGGATATAGAATCCCAGTTATAAAGGAGCACTCTGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.005
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.5=41.7)
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGTTTTCCTGAACAACCT
R:
GGTCTCTTCATCTGGTGTCCC
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)