HsaEX0000245 @ hg38
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69222533-69225529:-
Coord C1 exon
chr17:69225325-69225529
Coord A exon
chr17:69223628-69223707
Coord C2 exon
chr17:69222533-69222697
Length
80 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTATACCCCTAGAGAAA
3' ss Score
-4.41
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAATGGACAATAACATTGTTTCTAGGGCTATATTTGTGCATCTTTTCGGAACACTTCAGAGCTACCCGTTTTCCTGAACAACCTCCTAAAGTCCTGGGAAGCGTGGATCAGTTTAATGACTCTGGCCTGGTAGTGGCATATACACCAGTCAGTAACATAACACAAAGGATAATGAATAAGATGGCCTTGGCTTCCTTTATGAAAG
Seq A exon
AAAATCAGTGATGTTAGCACTGTCCTCATAAAAGTTTCACCGCCTGACTCTATATTGGGAAGGATGAGGAGTTTTGAAAG
Seq C2 exon
GAAGAACAGTCATTGGGACACCAGATGAAGAGACCATGGATATAGAACTTCCAAAAAAATACCATGAAATGGTGGGAGTTATATTTAGTGATACTTTCTCATATCGCCTGAAGTTTAATTGGGGATATAGAATCCCAGTTATAAAGGAGCACTCTGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-'4-10,'4-9,5-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.5=41.7)
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Main Inclusion Isoform:
ENST00000269081fB21
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGTTTTCCTGAACAACCT
R:
GGTCTCTTCATCTGGTGTCCC
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development