HsaINT0000444 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69222533-69225529:-
Coord C1 exon
chr17:69225325-69225529
Coord A exon
chr17:69222698-69225324
Coord C2 exon
chr17:69222533-69222697
Length
2627 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ATGTTTTTCATACATGGTAGGAA
3' ss Score
6.44
Exon sequences
Seq C1 exon
GAATGGACAATAACATTGTTTCTAGGGCTATATTTGTGCATCTTTTCGGAACACTTCAGAGCTACCCGTTTTCCTGAACAACCTCCTAAAGTCCTGGGAAGCGTGGATCAGTTTAATGACTCTGGCCTGGTAGTGGCATATACACCAGTCAGTAACATAACACAAAGGATAATGAATAAGATGGCCTTGGCTTCCTTTATGAAAG
Seq A exon
GTGTGTTGTCCAATAACCAATGTTTCAGTATTATGTGACTTAATTTTCAAGTTCTTTTTGCAGGTTGAATTTACTTACCTAGCCTGTGTGTCAGTGATTCTCAACTGAGGCAAAGATTCTCATTATATATGCAGTACAGGGGTTGGTGTGAAGCTAAGGGTAGGTGGGCAACAGATGAAATGATTTACTTTTGTTTGTTTGTTTGTTTTTAATGATATGCATACCGTTTGCCCTTTATACTAGAACATATTGTTGCAGTAGGAAAAAAAGATTGGACCCATTTTAGATGATACAAATTTCACTTTTCCAAAACTTAACTTAAAAAACTTTATATTTGGGTTGGTATTCTATAATTTAAAGAGTTTCAAAAAATTTTAAGGATTTAATTATTTTCAATTGAGATTGAAATAAATATAGTTCCCAGTATATAGGAATTATAAATCAAAGGTGTTTGAAATTCAAACTCAAGCTTAGCAATGGTGTTGAAAAAGCATTACTGTTTGGTGTATAAAAATAGTTAAAATGTACAGCTCAGGGCATTTAAAATTATTTAAAATCAAATCAGGTATTGGCTACTGAAAGTCAACAAATTCACAGCCCTTGATCTTAGAGTAGTGAGGCTTTTTTTTTTTTTTTCCCATAAGACTTTTTCTGCATATCTGGACTCAGAAAATAGATGTCTCTATGTTATGTAGGATGCTGCATTAATTTGATGTATGCATCTCATAAAGAAATAAGAACACCTGAGAGTCCTACTTACTATGTGAGACCTTTGCCTACCATCCTTTATATCTCTACTGCCATTAGGAGTAACTATTGGTGGTCAGCTGTGGTCTCTGGACTCTCCATAGAGGCCTTTGCTCCTGCATAGGGAAAGTATCAGGATAAAATGTTCTTTTCTTCAGCAATCTTAGCCTACTATCAAATTTCTCTTGTTGTTAGCCCTCATTCTGCCAGGGTTCTGAACATTGGCCATTTCATCCTTTTGTACATTTTATCCAATCTGTTAACGTCTCAGCTCTAATCACTGCTTTTTCTTGTCTTTCTGAAACTTTTATTTAGTTTTTTGGTGTCTGGATTGCCATGCCAAGGGACACCTCCAAACTCTGAATTTTAATTATTTTATGTGAGTTGCTAATATTCTGTGCCTAACCTATCCAAGCTTTCGAATGGGTATTGTTATCCCTGGCTGCTTTACCCTGTTTTGTAATTCTTCATTGCAGTTTCTGGAGCTTTGACTTTGGTGGGCCTCCCTTACTTGCATTGTTTACATGTTCTGCCTGACCACAGTGTTGATTCTGCCCTGATCTGTCTCTATTCACTTCCTTTGTGTAGTCATTTACCTCATTTTTTCTGAACTCATGAAGCATTTACTGAAGCCTCAGGGACTATTCTTCCTGTATGCACAGTGTAAGCTAATAGCCACTTTCTGTCTTAGTCTCACGGACCACTGGACTCTGTCTCTTTCTTATATAAAATATCTCATTCCAGCTACCATGCTCGCCTGTTCCAACCACAGCTCCTCTCTCACTGTCTTATTCTACATTTATCTAACTCTTGCTTTTTAGCATAAATATTCATGGTTTGGCCTTGACAGTATTTTTTATACCCCTAGAGAAAATCAGTGATGTTAGCACTGTCCTCATAAAAGTTTCACCGCCTGACTCTATATTGGGAAGGATGAGGAGTTTTGAAAGGTATGGCTACAGCATAAAATAAACAGCTTTTTCATCTTAATGTAGATTTCACCCTGAGTGAGATACAAAGTTAATAAAATTTTTAGAACATAATACATAAACGTGAAAAAGGAGGCACTAATTGGACCAGTGATTTTCAAAGCTTCTGTTAGTAATAGATCTATTAAACACTTAGTGGGTGGATTACTCCTGCAGATTGTAAACTCATTCATTTATGCACTGATTACTATACACTTAATTCTTAGAGAGTGTTCTTGACCTCAGAGAATCTGTAGGTAGACTATATTTTTTATTTTTGTACTCTGATTTTTTGTATACAATTTACCTCTAGTGTACTATTTTCATGTGATATCAGTTTATAATCTTGGCAGAAAAAGAGAAAACACCAAATTCTGAGTATTTGTATTGCTTACTTTAAATATTTTTCCTTTTAATTCTTAAATTATTTTAGTCACTAAAGTAATATCTACTTTAAAAAAAGTTGAATAGTACAAACTTGTATGAAGCAAAAATATGAGAGCTTTTCCTTTCATCTTCACCACTACTTCCTCTCCTCCCCTACCCCCTCTCCTCCCCTACCCCTCATTCAAATTGTGTATATCCTTCAAGGCAAATATGCACATGGTCATATATAGAGTATGTTTCTATGCTTACATAGGCACATAAATTCAGTTTTCTTTACCAAAATGAGATCACACTAAAAGCAATATGCTGCAGATTTTTAAAAGACAATGTGTCCTTTGTGTCTTTTCATGTATTTGCATTGAACTTAAAACAATAGTTTCACTCAGCCTTTTACTAAGAGGCAGCTATCCAGAAATAATATATAATACCACTAATTTTATATAAAACAAGCAACTGTATTTTGTTTTTGTGTCCTCTAGTAATAAGTTTACATGATTATTTATTTATGTTTTTCATACATGGTAG
Seq C2 exon
GAAGAACAGTCATTGGGACACCAGATGAAGAGACCATGGATATAGAACTTCCAAAAAAATACCATGAAATGGTGGGAGTTATATTTAGTGATACTTTCTCATATCGCCTGAAGTTTAATTGGGGATATAGAATCCCAGTTATAAAGGAGCACTCTGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.5=41.7)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development