BtaINT0010840 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61959366-61962082:+
Coord C1 exon
chr19:61959366-61959579
Coord A exon
chr19:61959580-61961917
Coord C2 exon
chr19:61961918-61962082
Length
2338 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ATATTTTTCACACCTGGCAGGAA
3' ss Score
6.55
Exon sequences
Seq C1 exon
CTGCAGGAGTGGGCCATGGTGCTGTTCCTGGGGCTCGCTCTCTGCCTCTTTGCGGAACTCTTCAGAGCTACTCATTTCCTGGAACAGCCGCCTCAGGTCCTGGGACGCGTGGACGAGTTTAATGACTCCGACCTGGTGCTGGTGGCCTATACCCCCGTCACTAACGTGACCCAGAGCATCATGGATAAGGTGGCTGCAGCTGCCTTTATGAAAG
Seq A exon
GTGTGTTGTTCCGTGGCCCAGGCTTCATTATCATGCAACCTATTTGCATTAAATTTTAAGTCTGTTTTGCAAGTTGAGTTTATTTACCCAGCCTGTGAGTCAGTGGTTTTCAACTGGGGCAGGATCCTCATTTCACATGGGGTGGAGGGCTTGGCGTGAAGCTCCAAGTAAGGGTAGGTCTCAAAGGAACATAGATTTTGTTGTTCTTCTTCAGACACTGTCACGTCTGACTCTGCAACCTTATGGACTGCAGCACACCAGGCTTTCATGCCCTTCACCATCTCCCAGAGCTCGCTCAAACTTATGTCCAGTGATGCCTTCCAACCATCTCATCCTCTGTTGCCCCCTTCTCCTCCCGCCTTCAATCTTTCCCAGCACCAGGGTCTTTTCCAATGAGTCAGCTCTCTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCCGTGAATATTCAGGGTTGACTTCCTTTTGGATTGACCAGTTTGATTTACTTGTTATCCAAAGGACTCGCAAGAGTCTTCTCCAATACCACAGTTCAAAAGCATCAATCCTTTGGCGCTCAGCCTTCTTTATGGTCCAGCTCTCACATCTGTACATGACTACTGGAAAAACCATAGCTTTGACTATATAGACCTTTGTTGGCAAAGTAACATCTCTGTTTTTTAATATGGTGAACTCATTCATTATAAATGTTGTATGAGCTTAATTCTTAAGATAGTGTCCTTGACTCCAGAGAGCCTGGGTGGGTTCTAACTTTACCTCTGATTTTGCACTCTGATTCTTTGTGTGCTGTTTATTACTTCTGGCGTACTATCTTCATATGATAGAAATCTGCTTATAATCTTGGCAGAGAAAAACCCCACCAAATTCTGAAGCATTTCTACTGGTTATTTAAAGTACTTTTAATTTTAAAATTATTTTAATTGCCAAAGTAACAGCCAGTTAATCAGTACAAACTTGTCTGAAGCAAACAATGAAAGCTTTTGCCTTCATTCAAGCCACCATTCCCTCCTCTAAAAATTTGTGTGTATCTTTCTAGGATAATATGTACACACATACACACACGGTCACATATGTAGGCATGCGTGCACACAGGCGCACAAATTCAGCTTTTCTTCACTTCAATGGGGACTATGACTATGCTAAATTATTGGGACCTACTTTGCATATAGAGGAAGCAAGATTCCAAGTTGCTCAGCTAAGATTTTAACAAGCGGCAGAGGAGTTGTGTCCAGGCACCCTTAACTCTAGGCTCTTTGCCCTCAGCTAGCACTCTCAGATTTAAAGATGCTAAGGTGAAAGAGACCAGATGCTTTTTCCCCTCAGTGGACACAGTAATCTGATTTACCCTGACCCAGGCCCCACTCTACATAACTGAGGACCAGGCGCTGTTTTGGTTCTGCTCCAGATTCAAGTCCTGGAGGGCAGTCTGAGCAACAGCACTGTGAAGGCACCAGCCTCCGAGCCACAACGTTAGGGAAGCAAATCCTTAGATAAAGAAATGGGCCCAGATGCTGATGCTCCCAGACATCCCTAAACCCCACAGCAAGCCAGGACAGCTCTTGCTTGGAAAATACAGTAGATGAAGGAGCCTGGTGGGTTACGGTCTGTGGGGTCTCAAAGAGTCAGATACAACTGCGCACACACACACAACTGCTTTTTTAAAAAGAATGTGGTTGACCCCTGAACCTCTGTGGGGCTAGAGGAACCTACTCTTCAGGAAGTTGAAGACCCGAGTAATTCCTGGTTGGCCCCTGTATCTGTGTTTCCTCAGCATCTGAGCTCCCTCCACTCAGGGTTCTGCAACCTCACATTCCACCAGTGCCTGGGGAGTGCAGTAATGCAGCGTTTCCTTCTGGGAAAAACGCACATATGAGGGGTCCCATGCAGCCCAAGCCTCTGGGGTTCAGAATCAGTGGCATATCATTCACATCTTCTCACGTATTTACATTGAGCCTTAAACAACAGGAAAGACTTTCAGCCCTTAACTTAGAGGTACCTACTTGGTGATATCATAATATATGGCACCAGTGGGCTACCCCAGTGGCTCAGAAGGAAATGCAGGAGACCTGGGTCGGGAAGATGCCCTGGAAGAGGGCGTGGCCACCCTCTCCGGTATCCTTGCCTGGAGAACCCCATGGACAGAGAAGCCTGGCAGGCTGCAGTCCATGGAGTCACAAAGAGTCGGAGGCGACTGAAGAGGCTGAGCACACACGCACCCATGGCATCAATAATTGTATGGGAAACCTAAGCGACTGCTACTGGTCTTGTGTCCTCTAGTAATAAAGTTCATCTAATCAGTCATATTTTTCACACCTGGCAG
Seq C2 exon
GAAGAACAATCCTTGGGATCCCTAATGAAGACGCCATGGACAGAGTACGCCCAAGAAACGACTCTGAGATGGTGGGAATTGTGTTCAATGACACTTTCTCATACAGGCTGAAGTTCAGCTGGGGACACAGGGTCCCGATTTTAAGAGAGCACTTCGAGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(17.8=95.8)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development