HsaEX0001399 @ hg19
Exon Skipping
Gene
ENSG00000181007 | AC092296.3
Description
zinc finger protein 82 homolog (mouse) [Source:HGNC Symbol;Acc:28682]
Coordinates
chr19:36898789-36909484:-
Coord C1 exon
chr19:36909394-36909484
Coord A exon
chr19:36900683-36900769
Coord C2 exon
chr19:36898789-36898915
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTTCCTCTCCCTAGATC
3' ss Score
12.44
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CGGGTTCGCGCCCCGAGTGAGCAGTCCTGGCCCGGAGCGTCGGTCCTGGTAATCTGTAGGAAAAGCGCTGCGGCCCAGGGGGTAAAGAGAG
Seq A exon
ATCAGCCTCTGTGGACTCGGTGCTTCTCCTGGCAAGTAAACCCCAAGGAGGACTGACCAGTTCTTGAATTTCTATACCATGGCCCTT
Seq C2 exon
CGATCAGTGATGTTCAGTGATGTATCCATAGACTTCTCTCCAGAAGAGTGGGAATACCTGGACTTGGAACAAAAGGACTTGTACAGAGATGTCATGTTGGAGAACTACAGCAACTTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181007_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTAGGAAAAGCGCTGCG
R:
CCAGTGAGACCAAGTTGCTGT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)