HsaEX0001399 @ hg38
Exon Skipping
Gene
ENSG00000181007 | ZFP82
Description
ZFP82 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:28682]
Coordinates
chr19:36407887-36418656:-
Coord C1 exon
chr19:36418492-36418656
Coord A exon
chr19:36409781-36409867
Coord C2 exon
chr19:36407887-36408013
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTTCCTCTCCCTAGATC
3' ss Score
12.44
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GCGCAGCCCGTTAGGCCCCGGGGATTGTGGCGTGACCCGGCAGCGGCTTCCTCCGTTCGGGCATCGCTGTGCCTCGGGTTCGCGCCCCGAGTGAGCAGTCCTGGCCCGGAGCGTCGGTCCTGGTAATCTGTAGGAAAAGCGCTGCGGCCCAGGGGGTAAAGAGAG
Seq A exon
ATCAGCCTCTGTGGACTCGGTGCTTCTCCTGGCAAGTAAACCCCAAGGAGGACTGACCAGTTCTTGAATTTCTATACCATGGCCCTT
Seq C2 exon
CGATCAGTGATGTTCAGTGATGTATCCATAGACTTCTCTCCAGAAGAGTGGGAATACCTGGACTTGGAACAAAAGGACTTGTACAGAGATGTCATGTTGGAGAACTACAGCAACTTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181007_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTAGGAAAAGCGCTGCG
R:
CCAGTGAGACCAAGTTGCTGT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development