HsaEX0002606 @ hg19
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1505023-1506927:-
Coord C1 exon
chr19:1506738-1506927
Coord A exon
chr19:1506589-1506660
Coord C2 exon
chr19:1505023-1506315
Length
72 bp
Sequences
Splice sites
3' ss Seq
CAGCACCGCCCATCCCACAGACC
3' ss Score
5.89
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTCCTCCTGCAGGAGCCCAACCCTGGCATCGAGTTTGAGTTCTGGCTCCCTCGGGAGCGCTACAGCCCCTTCCAGGCTCGTGTGCAGGCCCTGGGCTGGCCCCTGAGGCAGCCTCAGCCCCGGGGGGTGGAGCCTCAGCCCCCCGCAGCCCCTGCTGTCACCCCTGCACAGACCCCAACGCTGGCCCCAG
Seq A exon
ACCCCTGCCCACCCTGCCCTGACACCCGCGGCCGCGCCCACCGACTACTCCACTATTGCGGCAGTGACTTTG
Seq C2 exon
TGTTCCAGGCCCGAGTGCTGGGCCACCACCACCAGGCCCAGGAGACCCGCTATGAGGTGCGCATCCAGCTCGTCTACAAGAACCGCTCGCCACTGCGGGCACGCGAGTACGTGTGGGCGCCAGGCCACTGCCCCTGCCCGATGCTGGCACCCCACCGGGACTACCTGATGGCTGTCCAGCGTCTTGTCAGCCCCGACGGCACACAGGACCAGCTGCTGCTGCCCCACGCCGGCTACGCCCGGCCCTGGAGCCCTGCGGAGGACAGCCGCATACGCCTGACTGCCCGGCGCTGTCCTGGCTGAGCCCCTGCAGGAGCCCCGGCCACACACAGCAAGAAAGATACATCTGACCAGCCTCAACGTCAACGTATTTCCCCTCTCACCCTGGCTTCCAGGCAGCTCTGAAATACGTCCCACCTGTGCAGCTATGTGACTCCCTCCCACACACGCTTAAGACACCTCTGCATGCAGTCAAAGCCACTGTCACAAGCCGGCAGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.527 A=0.360 C2=0.030
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.5=25.0)
A:
PF0175916=NTR=PU(7.7=32.0)
C2:
PF0175916=NTR=PD(91.3=94.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGCTCGTGTGCAG
R:
CACCTCATAGCGGGTCTCCTG
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)