DreEX6007274 @ danRer10
Exon Skipping
Gene
ENSDARG00000052118 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr7:50201789-50207799:-
Coord C1 exon
chr7:50207692-50207799
Coord A exon
chr7:50205854-50205925
Coord C2 exon
chr7:50201789-50204915
Length
72 bp
Sequences
Splice sites
3' ss Seq
TACATTACATGCTTCTATAGGCC
3' ss Score
7.5
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTCCCGCTGCTCAATGGCCTTTTCAGCCCCCCTATCAGCAGCAGCCGGTCCCACGTTTGGAAAGAGATGAAAACCGCAGGAATCGACTGCCTGAAATACATCGTAGAG
Seq A exon
GCCACTGTGGGAAATGTCGGCGGGTACGAGGAAAAGGTGAACGCCAGAGACAGTATTGCCAAAAAGATTTTG
Seq C2 exon
TATTCAGAGTTAAAGTGCTGGAAAAAGTCTATCTTGGTGAGGAGACCCGCTACGACGTCCAGATCATCCACACATATCGCAACCGCTATCGTGTGGAGCACCGGGAGTTCCTGTGGGCCCCCAACAAATGTGACTGTCCCCTTCTGGAGGAGGGCCACCAGTATGTGCTGATGCTTCGACGGCATATTAATTATGAACGCACTCTCAATCGCATCCTAATAGAGGAGGACAGCTACGCTCAGCCTTATAGAGCGCGTGAAGACGGCCTGCTGCGCCCCCTGGAGGAGCTTTGTGGAAACAGAGGGAGCAGGACTCGCTGGTAAACGCATGGACGTTCACGCTTTCACCAAAAACTTTCATGCACAAGAAAATAAATAAGGCGGCACAGTTAGAAACCTCACTACGACACTGATGATTTTACTGAAGCATTTGGCATTCCACAGCAAGGACATCGGACACTTGGTTGATGGGGGCACGAGGAGGCAAACCAAAGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052118-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.8=32.0)
C2:
PF0175916=NTR=PD(91.3=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCAATGGCCTTTTCAGC
R:
GTGTGGATGATCTGGACGTCG
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]