GgaEX1006469 @ galGal4
Exon Skipping
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3128805-3129637:-
Coord C1 exon
chr28:3129409-3129637
Coord A exon
chr28:3129212-3129283
Coord C2 exon
chr28:3128805-3129112
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCAGCCTTCGTCCCCGCAGGGC
3' ss Score
11.14
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGCTGCTGCAGGAGCCCAACCCAGGCATTGAGTACGAGTTCTGGCTGCCCCGCGGGCACCCCCAGCACAGCATGGTGGACACCAGCGCCCTGCGGCAGCCCCAACCCCGTGGAGCTGGCAGCCCCCCGCCCGCTGAGCCCCCACTCCCCACGGTGCCCCCCAGGGCCCGGGACCCCATCACAGAGCCATTGCCACCACGAAGCCCCCCTGGGGTCAGATCTGCTGCAG
Seq A exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
Seq C2 exon
TGTTCCGAGCACGGATCCTGGCGCGGCGCTCGGTGGGGCAGGAGATGCGCTACGAGGTGCAGGTGGTGACACCGTACCGGCACCGCTTCCCCATGGTACCACGGGAGTACGTCTGGGTGCCCGACACGTGCGGCTGCCCCACGCTGCTGGGGGGCCACGACTACGTGCTGATGGCACGGCGCCACGTCAACTACGAGCACACGCTGAACCGCATCCTGCTGCAACGAGACGGCTACGCACGGCCCTGGTCACCCCGCGAGGAGCGCGCGGTGCGGGACGCGGGACGGCACTGTGCCCACCTGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.360 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0175916=NTR=PU(7.7=32.0)
C2:
PF0175916=NTR=PD(91.3=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCATCACAGAGCCATTG
R:
GACGTACTCCCGTGGTACCAT
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]