GgaEX1006469 @ galGal3
Exon Skipping
Gene
ENSGALG00000024298 | ADAMTSL5
Description
NA
Coordinates
chr28:2567386-2568229:-
Coord C1 exon
chr28:2568047-2568229
Coord A exon
chr28:2567784-2567855
Coord C2 exon
chr28:2567386-2567684
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCAGCCTTCGTCCCCGCAGGGC
3' ss Score
11.14
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTCTGCCCCTGGATGCACAGGTGCTGCTGCAGGAGCCCAACCCAGGCATTGAGTACGAGTTCTGGCTGCCCCGCGGGCACCCCCAGCACAGCATGGTGGACACCAGCGCCCTGCGGCAGCCCCAACCCCGTGGAGCTGGCAGCCCCCCGCCCGCTGAGCCCCCACTCCCCACGGTGCCCCCCA
Seq A exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
Seq C2 exon
TGTTCCGAGCACGGATCCTGGCGCGGCGCTCGGTGGGGCAGGAGATGCGCTACGAGGTGCAGGTGGTGACACCGTACCGGCACCGCTTCCCCATGGTACCACGGGAGTACGTCTGGGTGCCCGACACGTGCGGCTGCCCCACGCTGCTGGGGGGCCACGACTACGTGCTGATGGCACGGCGCCACGTCAACTACGAGCACACGCTGAACCGCATCCTGCTGCAACGAGACGGGTACGCACGGCCCTGGTCACCCCGCGAGGAGCGCGCGGTGCGGGACGCGGGACGGCACTGTGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-'8-12,'8-10,10-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.360 C2=0.020
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(22.3=37.1)
A:
PF0175916=NTR=PU(7.7=32.0)
C2:
PF0175916=NTR=PD(91.3=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGTACGAGTTCTGGCTGC
R:
CATCTCCTGCCCCACCGA
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]