BtaEX0000254 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E583]
Coordinates
chr7:45528280-45529515:-
Coord C1 exon
chr7:45529323-45529515
Coord A exon
chr7:45529178-45529249
Coord C2 exon
chr7:45528280-45528830
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGACCGCACTGCCCCTGCAGAGC
3' ss Score
8.9
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
CAGGTCCTCCTGCAGGAGCCCAACCCAGGCATTGAATTCGAGTTCTGGCTCCCTCGGGAGCGCTATGGCCCCTTCCAGGCGCAGGCTCAGGTCTTGGGCTGGTCCCCGCGGCAGCCTCAGCCTCGAGAGGTAGAACCTCAGCCCCTTGAGTCCCCCACTGTCATCCCTCCACGGACCCCGATACCCACTCCAG
Seq A exon
AGCCCTGTCCACCCTGCCCTGACACCCGCGGTCGTGCCCACCGGTTACTCCACTATTGCGGCAGTGACTTCG
Seq C2 exon
TGTTCCGGGCCCGTGTGCTGGGCCGCGTCCGCCAGGCTCAGGAGACTCGCTATGAGGTGCATGTGCAGCTCATCTACAAGAATCGCTCTCCACTTCGGGCCCTGGAGTACGTGTGGGCGCCAAGCCGCTGCCCTTGCCCCCCGCTGGCCCTCCATCGGGACTACTTGCTGGCTGCGCGGCGCCTCATCAGCCCTGATGGCACCCAGGACCGGCTGCTGCTCCCCCATGCTGGCTACGCTCGGCTCTGGAGCCCTGCCGAGGACAGCCGAGTGCGCCTGGCTGCCCGGCACTGCCCTCTCTGAGCCCCCGGACTAGACCTTGGCCACACATGGGTGACTAGTCTTAAAGTCAGCATATGTCTCCTCTTGCCATAGTTTCCAGGGAGCTAGGCACTGTTTGTCTTCCACCTGCAGCTCTATGACTCTCCCATCATCACACTCAGACACCTCTACATTCAGAGCCGCTCTCACTAGCAGGCCCACACGGGTGGGGACTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006662_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=0.320 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.7=32.0)
C2:
PF0175916=NTR=PD(91.3=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAACCTCAGCCCCTTGA
R:
GTACTCCAGGGCCCGAAGT
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development